BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67800.2
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475885 jgi|Araly1|475885|fgenesh2_kg.2__1015__AT1G67800.2 2475 0.0
Ahg921731 jgi|Araly1|921731|scaffold_103012.1 937 0.0
> Ahg475885 jgi|Araly1|475885|fgenesh2_kg.2__1015__AT1G67800.2
Length=1654
Score = 2475 bits (1340), Expect = 0.0
Identities = 1558/1662 (94%), Gaps = 20/1662 (1%)
Strand=Plus/Plus
Query 64 AAGAAGGGAACTTTGTTGTTGGCTTAATCTGATTTTTTGACATATGCTTGAAGTGTTGCA 123
|||||||||||||||||||||| || |||||| ||||||| ||||||| ||||||||||
Sbjct 5 AAGAAGGGAACTTTGTTGTTGGGTTGATCTGAATTTTTGATTTATGCTTCAAGTGTTGCA 64
Query 124 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 124
Query 184 TAAAGAGTCACCTAGAGGAGGTGGAAGTGGTCGTAGGTATGAACGTAGTGTGTCTGGGAG 243
||||||| | | | |||||| |||| |||| ||||||||||||||||||||||| ||
Sbjct 125 AAAAGAGT--CGAATA-GAGGTGAAAGTAGTCGAAGGTATGAACGTAGTGTGTCTGGTAG 181
Query 244 CTCATCTTATTCGTCTGCTTGGGACCAGAGCAGCTATTATCAGACACCAAACCATCCATC 303
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 CTCTTCTTATTCGTCTGCTTGGGACCAGAACAGCTATTATCAGACACCAAACCATCCATC 241
Query 304 TGCGTCTCCTGTTTCATCCTATAATTCTGGGAGACAAACACCGAAGAATCTTGAGAGGAA 363
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 242 TGCGTCTCCTGTTTCCTCCTACAATTCTGGGAGACAAACTCCGAAGAATCTTGAGAGGAA 301
Query 364 GTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTCTTTCACA 423
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 302 GTATTCACGGATTGCTGATAACTACCGTTCCATCGATGAGGTTACCGCTGCTCTTTCACA 361
Query 424 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCAACGAGTG 483
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 362 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACAAAGAGCAATGAGTG 421
Query 484 GACAGGGGCGAGATCATTTGGTAGGAAGAGTCTGCATTTCATTGGAACTACTCCAAACCC 543
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 422 GACAGGGGCAAGATCATTTGGTAGGAAGAGTCTGCATTACATTGGAACAACTCCAAACCC 481
Query 544 TTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGAGGATAATTT 603
||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 482 TTACCAGCAAGCTATTTCCATCATTGGAAAGACTTTGTCAGTTTTTGATGAGGATAATTT 541
Query 604 GATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTTCAGTTTCAA 663
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 GATCCCCTGTTATGGATTCGGAGATGCTACAACCCATGATCAGGATGTCTTCAGTTTCAA 601
Query 664 TCCCAATGATACATATTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 723
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCCCAATGATACATTTTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 661
Query 724 TCCCCAGCTTCGTCTCTCAGGTCCGACATCTTTTGCACCTATCATCGAAAGGGCCATGAC 783
||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 662 TCCGCAGCTCCGTCTTTCAGGTCCGACATCTTTTGCACCCATCATTGAAAGGGCCATGAC 721
Query 784 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCGCTGATGGACAGGT 843
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 722 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATCATCGCTGACGGACAGGT 781
Query 844 GACAAGAAGTGTTGATACAGATAACGGTGGATTCAGTCCACAAGAGCAGCAGACTATTGA 903
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 GACAAGAAGTGTTGATACAGATAACGGCGGATTCAGTCCACAAGAGCAGCAGACTATTGA 841
Query 904 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 901
Query 964 TCCC-TGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTCGTGCCTTTGACAATT 1022
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 902 -CCCTTGGGACACCATGAGACAGTTTGATGACAACATCCCTGCTCGTGCCTTTGACAATT 960
Query 1023 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1020
Query 1083 CAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAAC 1142
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 CAGAATTCGCGCTTTCCGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAGC 1080
Query 1143 TAGGCTTACTTGGACAAAGAACCGGACATTGTCCAGACAGGATTGCGCTTCCACCACCAA 1202
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1081 TAGGCTTACTTGGACAGAGAACTGGACATTGTCCAAACAGGATTGCGCTTCCACCACCAA 1140
Query 1203 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGTTTTCAAA 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGCTTTCAAA 1200
Query 1263 ACAAACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCATAACGAGAGCC 1322
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1201 ACAGACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCGTAACGAGGGCC 1260
Query 1323 AGCAACAGTTTTGCCCCGTATGTCTAGTGAGTGCAAAGAACATGGCTTTCAATTGTGGTC 1382
|||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1261 AGCAACAGGTTTGCCCCGTATGTCTAGTGAGTCCAAAGAACTTGGCTTTCAACTGTGGTC 1320
Query 1383 ATCAGACTTGCGCTGGATGTGGGGAAGACCTCCATGTGTGTCCCATTTGCCGGAGCTCAA 1442
||||||||||| | | ||||||||| |||||| || | || |||||||||||||||||||
Sbjct 1321 ATCAGACTTGCTCAGAATGTGGGGAGGACCTCAATATTTGCCCCATTTGCCGGAGCTCAA 1380
Query 1443 TCTCGGTTCGTATCAAGCTTTATTAAGATAAGTCTCTCAAGAACTGAAGGAACCCGA-GG 1501
||||||||||||||||||||||||||||||| | ||||||| || ||||||||| | ||
Sbjct 1381 TCTCGGTTCGTATCAAGCTTTATTAAGATAAC-C-CTCAAGAGCTAAAGGAACCCAAAGG 1438
Query 1502 TGGTC-TGAGATC-TTTCACAGCCAACACCATCCCAACTTAGATCTCAT----TTACCAG 1555
|| | ||||||| ||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 1439 TGACCCTGAGATCATTT-ACAGCAAACTTCATCCCAACTTAGATCTCATGACATTACCAG 1497
Query 1556 TGTCCTAACATTTGTTTTTACTTTGAGGGGAATAACCGGTTCCTCTCAAAGGTTTTGTAG 1615
||||||| ||||||||||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 1498 TGTCCTAGCATTTGTTTTTACTTTGAGCGGAATACCCGGCACCTCTCAAAGGTTT-GTAG 1556
Query 1616 ATAATCTGTTGTCAATTTTGCATTCTCATTGCACATGAAAAAACCACAGCAGACTCTCTC 1675
|||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1557 ATAATCTGTTGTCAGTTTTGAATTCTCATTGCACATGGAAAAACCACAGCAGACTCTCCC 1616
Query 1676 GTGAATAAAGGATCCTTTCTCTGCGGTTACACATTTTTACTT 1717
|| ||||||||||||||| || ||||| ||||||||||
Sbjct 1617 GTAAATAAAGGATCCTTTGG-TG---TTACAGATTTTTACTT 1654
> Ahg921731 jgi|Araly1|921731|scaffold_103012.1
Length=1308
Score = 937 bits (507), Expect = 0.0
Identities = 755/873 (86%), Gaps = 23/873 (3%)
Strand=Plus/Plus
Query 357 AGAGGAAGTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTC 416
||| ||||| ||||| ||| | |||| ||||||||||||||||||||||||| | |||||
Sbjct 202 AGAAGAAGTTTTCACAGATCGGTGATTACTACCGTTCCATTGATGAGGTTACGGGTGCTC 261
Query 417 TTTCACATGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCA 476
|||| ||||| ||||||||||| |||||| | ||||||||||| |||||||| |||||||
Sbjct 262 TTTCTCATGCTGGTTTGGAGTCATCGAATTTGATTGTTGGTATTGATGTCACTAAGAGCA 321
Query 477 ACGAGTGGACAGGGGCGAGATCATTTGGTAGG-AAGAGTC-TGCATTTCATTGGAACTAC 534
| ||||||||||| ||||| |||||| ||| || || | |||||| ||||||||| ||
Sbjct 322 ATGAGTGGACAGGAGCGAGCTCATTTAACAGGCAA-AG-CTTGCATTACATTGGAACAAC 379
Query 535 TCCAAACCCTTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGA 594
||||||||| || || ||||| ||||| || || |||||||||||||| | ||| |||||
Sbjct 380 TCCAAACCCGTACCAGCAAGCGATTTCTATTATCGGAAAGACTTTATCCGCTTTCGATGA 439
Query 595 GGATAATTTGATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTT 654
||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 440 GGATAATTTGATCCCTTGTTATGGTTTTGGAGATGCTACAACACATGATCAGAATGTCTT 499
Query 655 CAGTTTCAATCCCAATGATACATAT-TGTAACGGGTTTGAAGAAGT--TCTCATGTGTTA 711
||||||| |||| ||||||||| | ||||| ||||||||||| || | ||| ||||
Sbjct 500 CAGTTTCTATCCGGATGATACAT-TCTGTAATGGGTTTGAAGATGTCCTTTCA--CGTTA 556
Query 712 CAGAGAGATTGTTCCCCAGCTTCGTCTCT-CAGGTCCGACATCTTTTGCACCTATCATCG 770
||||||||||||||| ||||| | ||| | |||| ||||| ||||||||||| |||||||
Sbjct 557 CAGAGAGATTGTTCCTCAGCTGCATCT-TGCAGGGCCGACTTCTTTTGCACCCATCATCG 615
Query 771 AAAGGGCCATGACAATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCG 830
|||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||
Sbjct 616 AAAGGGCCATGACAATCGTGGAAGAAAGTGGAGGACAGTACCATGTTCTTCTCATAATCG 675
Query 831 CTGATGGACAGGTGACAAGAAGTGTTGATAC-AGAT-AACGGTGGATTCAG-TCCACAAG 887
||||||||||||||||||||||||||||||| | || || ||||| |||| || |||||
Sbjct 676 CTGATGGACAGGTGACAAGAAGTGTTGATACCA-ATCAA-GGTGGCCTCAGCTC-ACAAG 732
Query 888 AGCAGCAGACTATTGATGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTG 947
| || |||| |||||||| ||||||||||| || | ||||||| | || |||||||| |
Sbjct 733 AACAAAAGACCATTGATGCAATTGTTAGAGCTAGCGCATATCCTCTATCGATAGTTCTGG 792
Query 948 TTGGTGTTGGAGATGGTCCCTGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTC 1007
||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 793 TTGGTGTTGGAGATGGTCCTTGGGATACAATGAGACAGTTTGATGACAACATCCCTGCTC 852
Query 1008 GTGCCTTTGACAATTTCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATC 1067
|||||||||||||||| || ||||||||||||||||| || ||| |||||||||||||||
Sbjct 853 GTGCCTTTGACAATTTTCAATTTGTGAATTTCACGGAGATTATGGCAAAGAACATTGATC 912
Query 1068 CAGCAAGAAAAGAGGCAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATA 1127
| | ||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 913 CTGGAAGAAAAGAAGCAGAATTTGCACTTTCCGCCTTGATGGAGATCCCGTCTCAGTATA 972
Query 1128 AAGCCACCCTCGAACTAGGCTTACTTGGACA-AAGAACCGGACATTGTCCAGACAGGATT 1186
| ||||||||||| || |||||||| ||| | |||||| ||| | | |||| ||| ||||
Sbjct 973 AGGCCACCCTCGAGCTCGGCTTACTCGGA-AGAAGAACAGGAAAGTCTCCAAACAAGATT 1031
Query 1187 GCGCTTCCACCACCAACTTA-TGCTACTCAATC 1218
|| ||||||||||||| | | ||||||| ||||
Sbjct 1032 GCTCTTCCACCACCAA-TCAGTGCTACT-AATC 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5