BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67850.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926055 jgi|Araly1|926055|scaffold_201616.1 1988 0.0
Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204 715 0.0
> Ahg926055 jgi|Araly1|926055|scaffold_201616.1
Length=1259
Score = 1988 bits (1076), Expect = 0.0
Identities = 1189/1244 (96%), Gaps = 6/1244 (0%)
Strand=Plus/Plus
Query 474 AGAAGATATGGGAATCTTTTCACGCAGTTCAATTAGTAGGAAATCAAAAGATGGAATGAA 533
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AGAAGACATGGGAATATTTTCACGCAGTTCAATTAGTAGGAAATCAAAAGATGGAATGAA 77
Query 534 GATCATTGCAACGGCATTTTTTGGAGTAACATTT-GGCTTTCTGATTGGAATATCTTTTC 592
|||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 78 GATCATCGCAACTGCATTTTTTGGAGTAAC-TTTCGGCTTTCTGATTGGAATATCTTTTC 136
Query 593 CATCATTATCAATCACTAAGGTGAGTCTCCCTACAAACTTTCTTCCTTCAAACGATCTCT 652
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 137 CATCATTATCAATCACTAAGGTGAGTCTCCCAACAAACTTTCTTCCTTCAAACGATCTCT 196
Query 653 CATATATCGAGGAAAAGGGTTCGAAAATTGCAACTCCAGAAAGTCATAAAGCTTGGTCAT 712
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CATCTATCGAGGAAAAGGGTTCGAAAATTGCAACTCCAGAAAGTCATAAAGCTTGGTCAT 256
Query 713 CATCAAAGGGTAACGATAGCAGCTCATCTACTCCGATTGACAAATCAAAGATCTGGGTAC 772
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
Sbjct 257 CATCAAAGGGTAACGATAGCAGCTCATCCGCTCCAATCGACAAATCAAAGATCTGGGTTC 316
Query 773 CTTCTAATCCTCGTGGTGCTGAAATGTTGCCACCGGGTATGGTTGCTGCTGAATCAGACT 832
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CTTCAAATCCTCGTGGTGCTGAAATGTTGCCACCGGGTATGGTTGCTGCTGAATCAGACT 376
Query 833 TCTATTTGCGCAGATTATGGGGTTTACCGCATGAGGATTTGAAAAGTGAACCAAGATACC 892
|||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct 377 TCTATTTGCGCAGATTATGGGGGTTACCGCAGGAGGATTTGACCAGTGAACCAAGATACC 436
Query 893 TCGCAACATTTACAGTGGGTATTAATCAGAAAGCAAATATCGATGCTTGTGTCAAGAAGT 952
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 437 TCGCAACGTTTACAGTGGGTATTAATCAGAAAGCAAATATTGATGCTTGTGTCAAGAAGT 496
Query 953 TTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATG 1012
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 497 TTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGTCAAGTAACCGAGTGGGATG 556
Query 1013 AGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGGTGGT 1072
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 557 AGTTTGAATGGTCGAAGACTGCTATACACATTAGCGTGCGAAAGCAGACAAAATGGTGGT 616
Query 1073 ATGCAAAGAGGTTTTTGCACCCTGATATTGTAGCAAGATATGATTATATCTTCGTCTGGG 1132
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 617 ATGCAAAGAGGTTTTTGCACCCTGATATTGTAGCACGATATGATTATATCTTCATCTGGG 676
Query 1133 ATGAAGACCT-GGGTGTCGAGCATTTTAACGCAGAAGAGTACGTAAAGATGGTGAAGAAG 1191
|||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 677 ATGAAGACCTTGGG-GTCGAGCATTTTAATGCAGAAGAGTACATAAAGATGGTGAAGAAG 735
Query 1192 CACGGCCTGGAGATTTCCCAACCTGGCTTGGAACCAAACCAGGGACTAACGTGGCAAATG 1251
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 736 CATGGCCTGGAGATTTCCCAACCTGGCTTGGAACCAAACCAGGGATTAACGTGGCAGATG 795
Query 1252 ACAAAGAGACGAGGAGATATGGAAGTTCACAAGATAACAGAAGAAAGACCTGGATGGTGC 1311
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 ACAAAGAGACGAGGAGATATGGAAGTCCACAAGATAACAGAAGAAAGACCTGGATGGTGC 855
Query 1312 TCAGATCCTCATCTCCCTCCATGTGCTGCATTCGTAGAGATCATGGCTCCTGTATTTTCA 1371
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 856 TCAGATCCTCATCTCCCTCCATGTGCTGCATTCGTTGAGATCATGGCTCCTGTATTTTCA 915
Query 1372 AGAAATGCCTGGCGATGCGTGTGGCATGTGATCCAGAATGATTTGGTACACGGTTGGGGT 1431
||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 916 AGAAACGCTTGGCGATGCGTGTGGCACGTGATCCAGAATGATTTGGTTCACGGTTGGGGC 975
Query 1432 CTTGACTTTGCACTCAGAAGATGTGTTGAGCCTGCACATGAGAAGATAGGAGTAGTTGAT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 976 CTTGACTTTGCACTCAGAAGATGTGTTGAGCCTGCACATGAGAAGATAGGAGTAGTAGAT 1035
Query 1492 TCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAGGTGAGGCGACAGAC 1551
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1036 TCTCAGTGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAGGTGAGGCAACGGAC 1095
Query 1552 GGGAAAGCACCATGGCAAGGGGTGAGGGATAGATGCAAAAAGGAATGGACAATGTTCCAG 1611
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1096 GGGAAAGCGCCATGGCAAGGGGTAAGGGATAGATGCAAAAAGGAATGGACAATGTTCCAG 1155
Query 1612 AGTAGAATGGCTAACGCAGAGAAGGATTATTTCAAATCCTTACAAGTAGAAGGCTCCTCA 1671
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AGTAGAATGGCTAACGCGGAGAAGGATTATTTCAAATCCTTACAAGTAGAAGGCTCCTCA 1215
Query 1672 AATTCAACAGCCACAACCATTTAA--TAGGAGAGTTCTTAAAGT 1713
||||||||||| |||||||||||| |||||||| ||| ||||
Sbjct 1216 AATTCAACAGCAACAACCATTTAAAATAGGAGAGAACTTTAAGT 1259
> Ahg313424 jgi|Araly1|313424|fgenesh1_pm.C_scaffold_1002204
Length=1092
Score = 715 bits (387), Expect = 0.0
Identities = 741/906 (82%), Gaps = 48/906 (5%)
Strand=Plus/Plus
Query 802 CCACCGGGTATGGTTGC-TGCTGAATCAGACTTCTATTTGCGCAGATTATGGGGTTTA-C 859
||||| ||||| |||| | | ||||| ||||| |||||||||||||||||||| | |
Sbjct 196 CCACCCGGTATTATTGCAT-CCGAATCGGACTTGTATTTGCGCAGATTATGGGG-GAACC 253
Query 860 C-GCATGAGGATTTGAA-AAGTGAACCAAGATACCTCGCAACATTTACAGTGGG-TATTA 916
| | ||||||||||||| ||| |||| ||||| || ||||||||||||||||| || ||
Sbjct 254 CTG-ATGAGGATTTGAAGAAG-CAACCGAGATATCTAGCAACATTTACAGTGGGTTA-TA 310
Query 917 ATCAGAAAGCA-AATATCGATGCTTGTGTCAAGAAGTTTTCAGAAAACTTCACTATTGTC 975
|||||| | || ||||| ||||||||||| || ||||||||||| ||||| || |||||
Sbjct 311 ATCAGAGA-CACAATATAGATGCTTGTGTTAACAAGTTTTCAGACAACTTTACAATTGTT 369
Query 976 CTGTTTCACTATGACGGCCGGG-TAAC---TGAGTGG---GATGAGTTTGAATGGTCAAA 1028
|||||||| | | || | ||| |||| || |||| ||||||||||| ||||| ||
Sbjct 370 CTGTTTCA-T-T-AC-GATGGGATAACAAGTGCGTGGAACGATGAGTTTGAGTGGTCGAA 425
Query 1029 GACTGCTATACACATTAGCGTAC-GAAAGCAGACAAAATGGTGGTATGCAAAGAGGTTTT 1087
|| ||| |||||||| || || | |||||||||||||||||||||||||||||| || |
Sbjct 426 GAATGCAATACACATAAGTGT-CAAAAAGCAGACAAAATGGTGGTATGCAAAGAGATTCT 484
Query 1088 TGCACCCTGATATTGTAGCAAGATATGATTATATCTTCGTCTGGGATGAAGACCTGGGTG 1147
|||| || || ||||||||| |||| |||||||| ||| | ||||||||||| || || |
Sbjct 485 TGCATCCGGACATTGTAGCACGATACGATTATATATTCATATGGGATGAAGATCTTGGAG 544
Query 1148 TCGAGCATTTTAACGCAGAAGAGTACGTAAAGATGGTGAAGAAGCACGGCCTGGAGATTT 1207
|||| || |||||||||||||| ||| || | |||||||||||||||||||| |||||||
Sbjct 545 TCGATCACTTTAACGCAGAAGAATACATACACATGGTGAAGAAGCACGGCCTTGAGATTT 604
Query 1208 CCCAACCTGGCTTGGAACCA-A-ACCAGGGACTAACGTGGCAAATGAC-AAAGAGACGAG 1264
| || ||||| ||||| ||| | | |||| |||| ||||| || || ||| ||| |||
Sbjct 605 CGCAGCCTGGTTTGGACCCAGAGAG-AGGGTTTAAC-TGGCAGATCACCAAA-AGAAGAG 661
Query 1265 GAGATA-TGGAAGTTCACAAG-ATAACAGAAGAAAGACCTGGA-TGGTGCTCAGATCCTC 1321
| ||| || |||| || ||| | |||||| |||| || | || |||||||| ||||||
Sbjct 662 AACATAGTG-AAGTCCATAAGGA-AACAGATGAAAAAC-TCGACTGGTGCTCTCATCCTC 718
Query 1322 ATCTCCCTCCATGTGCTGCATTCGTAGAGATCATGGCTCCTGTATTTTCAAGAAATGCCT 1381
|| |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| |
Sbjct 719 CTCGGCCTCCATGTGCTGCATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCGT 778
Query 1382 GGCGATGCGTGTGGCATGTGATCCAGAATGATTTGGTACACGGTTGGGGTCTTGACTTTG 1441
|||| ||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 779 GGCGCTGCGTCTGGCACATGATCCAGAATGATTTGGTTCACGGTTGGGGCCTTGACTTTG 838
Query 1442 CACTCAGAAGATGTGTTGAG---CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAAT 1498
|||||||||||||||||||| |||||| |||||| |||||| |||| || || || |
Sbjct 839 CACTCAGAAGATGTGTTGAGGAGCCTGCATTTGAGAATATAGGAATAGTAGACTCACAGT 898
Query 1499 GGGTCGTTCATCAATCTTTTCC-TTCCCTTGGCAACCAAGGTGAGGC-GACAGACGGGAA 1556
|| |||||||||||| || ||| ||||||||||||||| || | | || | | |||||
Sbjct 899 GGATCGTTCATCAAT-TTATCCCTTCCCTTGGCAACCAGGGAAAAGAAGATA-ATGGGAA 956
Query 1557 AGCACCATGGCAAGGGGTGAGGGATAGATG-CAAAAAGGAATGGACAATGTTCCAGAGTA 1615
||| |||||||||||||||||||||||||| |||| |||||||| ||||||| ||| |
Sbjct 957 AGCGCCATGGCAAGGGGTGAGGGATAGATGTCAAAT-GGAATGGAAAATGTTCGAGAACA 1015
Query 1616 GAATGGCTAACGCAGAGAAGGATTATTTCAAATCCTTACAAGTAGAAGGCTCC-TCAAAT 1674
|| | | | ||| || ||||||||||||||||| |||||||| ||| || || || |||
Sbjct 1016 GAGTAGATGCCGCGGAAAAGGATTATTTCAAATCATTACAAGTCGAAAGC-CCATCCAAT 1074
Query 1675 TCAACA 1680
||||||
Sbjct 1075 TCAACA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5