BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67930.1
Length=2668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475901 jgi|Araly1|475901|fgenesh2_kg.2__1031__AT1G67930.1 4143 0.0
> Ahg475901 jgi|Araly1|475901|fgenesh2_kg.2__1031__AT1G67930.1
Length=2647
Score = 4143 bits (2243), Expect = 0.0
Identities = 2527/2661 (95%), Gaps = 31/2661 (1%)
Strand=Plus/Plus
Query 8 TTTGAAAAATGAG--T-ATCGCTTTGATCTCCTGCTAAAATCGCCATTGC--AAAATTCA 62
||||||||||||| | |||||||||| | ||||||||||||||||||| ||||||||
Sbjct 2 TTTGAAAAATGAGTATCATCGCTTTGA--T-CTGCTAAAATCGCCATTGCAAAAAATTCA 58
Query 63 AAACCTGTAGAGATTGAAACTGTaaaaaaaTGGCACTACCTCCATCGTCTCCTTCACCAT 122
||||||||||||| |||| | | ||||||||||||||||| |||||||||| |||
Sbjct 59 AAACCTGTAGAGA-AGAAA-T-T--GAAAATGGCACTACCTCCTTCGTCTCCTT---CAT 110
Query 123 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 170
Query 183 CCGGCGCACCACCACCACAAACACCGTCATCTTCCTCTTCTTCGCCGCTCGATTCTTTTG 242
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 171 CCGCCGCACCACCACCACAAACACCGTCATCTTCCTCCTCTTCGCCGCTCGATTCTTTCG 230
Query 243 CCACCGatccaatcctctccccattcctctcat-cttccttctcctccgcatcattctcc 301
||||||||||||| |||||||| |||||||| | ||||||||||||||||||| ||||||
Sbjct 231 CCACCGATCCAATTCTCTCCCCTTTCCTCTC-TCCTTCCTTCTCCTCCGCATCTTTCTCC 289
Query 302 tccgccgctctcgcttctGGATCTCCGGCCTCCACCGCCGAACGTCTCCACCAAGCAATC 361
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 290 TCCGCCGCTCTCGCTTCTGGATCTCCGGCTTCCACCGCCGAACGTCTCCACCAAGCTATC 349
Query 362 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCATCTCTCGTCACCCTGAATTGctcgct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCATCTCTCGTCACCCTGAATTGCTCGCT 409
Query 422 cagctctcttctctctcacacgccgatgtatctctctcttctctccgatcctccgtctct 481
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 410 CAGCTCTCTTCTCTCTCACACGCCGATATCTCTCTCTCTTCTCTCCGATCCTCCGTCTCT 469
Query 482 tcactccaatctTCAATTCGCCGTGTCAGATCCGACCTCTCTGAACCGATCAAATCGATC 541
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 470 TCACTCCAATCTTCAATTCGCCGTGTTAGATCCGATCTCTCTGAACCAATCAAATCGATC 529
Query 542 CGATCTAAATCTGTTCAGCTATCTAATCTCCAT-ACAGCTACTGAGTTACTATCTCACTC 600
||||| ||||||||||||||||| ||||||| | | |||||||||||||| ||||||||
Sbjct 530 CGATCCAAATCTGTTCAGCTATCAAATCTCC-TCTCCGCTACTGAGTTACTCTCTCACTC 588
Query 601 CGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAGCGGATTTTCCTGATCCAGA 660
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 589 GGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAACGGATTCTCCTGATCCAGA 648
Query 661 TAAGATCGATCTCACTAAAGCTGCACAGTTCCATTTCGAGATCTTAACAATGTGTAAAGA 720
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 649 TAAGATCGATCTCACCAAAGCTGCACAGCTCCATTTCGAGATCTTAACAATGTGTAAAGA 708
Query 721 GTATGATCTCTTTGGCATTGATGTGATTGATGAGGAAATCAAGTTTGTTACTGAGATTGG 780
||| |||||||| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 709 GTACGATCTCTTCGGCATTGATGTGATCGACGAAGAAATCAAGTTTGTTACTGAGATTGG 768
Query 781 AGAGAAATTGAGATCTGAAGCTATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 840
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 769 TGAGAAATTGAGGTCTGAAGCGATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 828
Query 841 AGCTGAAGTTGGGACTGGTTTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGTCTACGGT 900
|||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 829 AGCTGAGGTTGGGACTGGGCTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGCCTACGGT 888
Query 901 GGATCAATTGGTGAATAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 960
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGATCAATTGGTGAACAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 948
Query 961 TATGAAAGCTATTACTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1020
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TATGAAAGCTATTTCTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1008
Query 1021 CGGATCACCGCATATTGGTGGTGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1080
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGAGCACCGCACATTGGTGGCGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1068
Query 1081 TAGTTGTATGGAACAGTTGTGTTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1140
|||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAGTTGTATGGAGCAATTGAATTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1128
Query 1141 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1188
Query 1201 CGATTCTATGTTAACCGATAGAGTCTGGGATGCACTTGTGAAGGCTTTTACTAGCCAAAT 1260
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1189 GGATTCTATGTTAACCGACAGAGTCTGGGATGCGCTTGTGAAGGCGTTTACTAGCCAAAT 1248
Query 1261 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCGAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1249 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCAAA 1308
Query 1321 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1368
Query 1381 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCTATATT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1369 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCAATATT 1428
Query 1441 CCAGACTGCTTTCTTATCCCTATGCTTTGGCCGCTTGTCAGACCTTGTAAACTCGATATT 1500
||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1429 CCAAACTGCTTTCTTATCCCTTTGCTTTGGCCGCTTGTCAGATCTTGTGAACTCGATATT 1488
Query 1501 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATTTCACAGGTATTATCACA 1560
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1489 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATCTCACAGGTATTATCACA 1548
Query 1561 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1608
Query 1621 TGAGATAGGCAAGGCCCTTAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1680
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TGAGATAGGCAAGGCCCTCAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1668
Query 1681 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1728
Query 1741 ATGTCAGCATCTGCAAGGAATCCACACACATATCTCATCCATGGTAGCGGACCTTCCCAG 1800
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1729 ATGTCAGCATTTGCAAGGAATCCACACACATATCTCATCCATGGTAGCAGACCTTCCCAG 1788
Query 1801 TATTGCTACTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCGGCATGTGAGCC 1860
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1789 TATTGCTGCTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCCGCATGTGAGCC 1848
Query 1861 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1908
Query 1921 TGATCAAAACTTTGGTGCTGATGACGCTGAC-ATGGACAACAACGCTTCCTCATACATGG 1979
||||||||||||||||| |||||| |||| | ||||||||||| ||||||||||||||||
Sbjct 1909 TGATCAAAACTTTGGTGTTGATGATGCTG-CTATGGACAACAATGCTTCCTCATACATGG 1967
Query 1980 AGGAGTTGCAGAGATCGATTCTTCACTTCCGCAAG-GAGTTCCTATCTAGACTATTGCCT 2038
| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1968 AAGAGTTGCAGAGATCGATTCTTCACTTCCGCA-GCGAGTTCCTATCTAGACTATTGCCA 2026
Query 2039 TCCGCAGCAAATGCTAACACTGCAGGAACAGAATCGATCTGCACAAGACTCACAAGACAA 2098
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2027 TCCGCAGCAACCGCTAACACTGCAGGGACAGAATCGATCTGCACTAGACTCACAAGACAA 2086
Query 2099 ATGGCGTCAAGGGTTTTGATCTTCTACATCAGACATGCATCCCTTGTGCGACCACTTTCA 2158
||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2087 ATGGCTTCGAGGGTTTTGATCTTCTACATCAGACATGCGTCCCTTGTGCGACCGCTTTCA 2146
Query 2159 GAATGGGGAAAACTCAGAATGGCCAAAGACATGGCCGAGCTGGAACTAGCAGTGGGACAG 2218
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2147 GAATGGGGAAAACTCAGGATGGCCAAAGACATGGCCGAGCTTGAACTTGCAGTGGGACAA 2206
Query 2219 AATCTATTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCGTTTAGGCCT 2278
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2207 AATCTGTTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCATTTAGACCA 2266
Query 2279 TTGGTTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCAATGATCTACCACCG 2338
|| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2267 CTGATTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCCAGGATCTACCACCG 2326
Query 2339 AGCATCGTCCTACATCATCTCTACACAAGAGGCCCAGACGAGTTAGAGTCACCGATGCAG 2398
||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 2327 AGCATCGTCCTCCATCATCTCTACACGAGAGGCCCGGACGAGTTGGAGTCACCAATGCAG 2386
Query 2399 AAGAACAGACTAAGTCCTAAACAGTACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2458
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2387 AAGAACAGACTAAGTCCTAAGCAATACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2446
Query 2459 ATCTGGAAAGGGATAAAAGCAACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2518
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2447 ATCTGGAAAGGGATAAAAGCGACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2506
Query 2519 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACA-CA 2577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2507 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACAACA 2566
Query 2578 -A-GAAAACTTATAAGCT----GTGCTTTGTTACCGAATCAATATTCTTCTATTGCGAAC 2631
| ||||||||||| ||| |||||||||||||||| | ||||||||||||||| |||
Sbjct 2567 CAAGAAAACTTATAGGCTCCAAGTGCTTTGTTACCGAACCTATATTCTTCTATTGCCAAC 2626
Query 2632 TTTTTTGTCTCATGGATTTTT 2652
|||| ||||||||||||||||
Sbjct 2627 TTTTATGTCTCATGGATTTTT 2647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100634427290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5