BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67940.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926090 jgi|Araly1|926090|scaffold_201651.1 1376 0.0
> Ahg926090 jgi|Araly1|926090|scaffold_201651.1
Length=831
Score = 1376 bits (745), Expect = 0.0
Identities = 799/825 (97%), Gaps = 3/825 (0%)
Strand=Plus/Plus
Query 119 TTGAAAACTTTAAAGCCATGCCATCACTTTGGTCTAACGAATCCGATGGATCATTACGAG 178
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 4 TTGAAAACTTTAAAGCCATGCCGTCACTTTGGTCTAATGAATCCGATGG---ATTACGAG 60
Query 179 AGCATCTTGTGGATGTTGTTGTGTCTGGTTCAGAACCAAAGATTCGGGTACATGATCTGA 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCATCTTGTGGACGTTGTTGTGTCTGGTTCAGAACCAAAGATTCGGGTACATGATCTGA 120
Query 239 CCCGAGTCGCCGATGATGGATCTCGGATCTTGAAAGGAGTTACGATAGATATACCAAAAG 298
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 121 CCCGAGTCGCCGATGATGGATCTCGGATCTTGAAAGGAGTTACGGTGGATTTACCAAAAG 180
Query 299 GTATGATCGTTGGTGTGATTGGACCTAGTGGAAGTGGAAAGTCAACGTTTTTGAGATCTC 358
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 181 GTATGATCGTTGGCGTGATTGGACCAAGTGGAAGTGGAAAGTCAACGTTTCTGAGATCTC 240
Query 359 TGAATCGTCTTTGGGAACCACCGGAGTCAACTGTGTTCTTGGACGGTGAAGATATAACCA 418
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TGAATCGTCTTTGGGAACCGCCGGAGTCAACTGTGTTCTTGGACGGTGAAGATATAACGA 300
Query 419 ACGTTGATGTTATTGCTCTTCGTCGTAGAGTTGGAATGCTTTTTCAGCTTCCTGTTCTTT 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTGATGTTATTGCTCTTCGTCGTAGAGTTGGAATGCTTTTTCAGCTTCCTGTTCTTT 360
Query 479 TTCAAGGGACTGTTGCGGATAATGTGAGATATGGTCCGAATTTGAGAGGGGAGAAACTAA 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TTCAAGGGACTGTTGCGGATAATGTGAGATATGGTCCAAATTTGAGAGGGGAGAAACTAA 420
Query 539 GTGACGAAGAGGTTTATAAGCTGCTAAGTCTTGCAGACCTTGATGCTTCCTTTGCTAAGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGACGAAGAGGTTTATAAGCTGCTAAGTCTTGCAGACCTTGATGCTTCCTTTGCTAAGA 480
Query 599 AGACTGGTGCAGAGTTATCTGTGGGTCAAGCTCAACGAGTAGCACTTGCAAGGACTCTAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGACTGGTGCAGAGTTATCTGTGGGTCAAGCTCAACGAGTAGCACTTGCAAGGACTCTAG 540
Query 659 CCAACGAGCCTGAGGTGTTGCTGCTCGATGAACCAACAAGTGCTCTTGATCCGATATCGA 718
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CTAACGAGCCTGAGGTGTTGCTGCTGGATGAACCAACAAGTGCTCTTGATCCGATATCGA 600
Query 719 CAGAGAACATTGAGGATGTTATAGTGAAACTGAAGAAGCAGAGAGGGATTACTACTGTGA 778
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 601 CAGAGAACATTGAGGATGTTATAGTGAAACTGAAGAAGCAGAGAGGTATTACGACTGTGA 660
Query 779 TTGTTTCTCACAGTATCAAGCAGATTCAGAAAGTTGCTGATATCGTTTGCCTTGTTGTCG 838
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 661 TTGTTTCTCACAGTATCAAGCAGATTCAGAAAGTTGCTGATATTGTTTGTCTTATTGTCG 720
Query 839 ACGGAGAGATTGTTGAAGTTCTTAAACCAAGTGAGCTTTCGCACGCTACGCATCCAATGG 898
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 721 ACGGAGAGATTGTTGAAGTTCTGAAACCGAGTGAGCTTTCGCACGCTACGCATCCAATGG 780
Query 899 CACAGAGGTTTCTTCAACTCAGTTCTTGAGACCATTTTCTCATTG 943
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 781 CACAGAGGTTTCTTCAACTCAGTTCTTGAGACCAATTTCTCATTG 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5