BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67960.1 Length=2117 Score E Sequences producing significant alignments: (Bits) Value Ahg475928 jgi|Araly1|475928|fgenesh2_kg.2__1058__AT1G67960.1 3306 0.0 > Ahg475928 jgi|Araly1|475928|fgenesh2_kg.2__1058__AT1G67960.1 Length=2078 Score = 3306 bits (1790), Expect = 0.0 Identities = 2000/2097 (95%), Gaps = 32/2097 (2%) Strand=Plus/Plus Query 1 GGTTTTCGATTTCGTGAATCCAATTTTTGTGTGTATGTATTCGCTTCGTCTCTCCATTTT 60 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1 GGTTTCCGATTTCGTGAATCCAATTTTTGTTTGTATGTATTCGCTTCGTCTCTCCATTGT 60 Query 61 TCTTCGTCTTACGTTTACGTAATCC-AATGGCGATTAGATCCTCGGGAAGAAAACTATCA 119 ||||| || ||||| ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCCTCATACGTATACGTAACCCAAATGGCGATTAGATCCTCGGGAAGAAAACTATCG 120 Query 120 TTTGAGATTCTCAGCCAAAACAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 179 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTGAGATTCTCAGCCGAAGCAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 180 Query 180 AGCTCAGATCCAATTACCGGAAACGTA-GCTTCAGAATCACCTAGAGACTACGGGAAACg 238 |||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 181 AGCTCAGATCCAATCACCGGAAACG-ACGCTTCTGAATCACCTAGAGACTACGGGAAACG 239 Query 239 aaagagatcgaagaagaagaagaagaa-agTGAACCAAGTCGAGACTATTCTAGAGAATG 297 ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 240 AAAGAGATCGAAGAAGAAGAAGAAGAACA-ACAACAAAGTCGAGACTATTCTAGAGAATG 298 Query 298 GAGATTCTCATTCAACGATCATCACCGGTTCAAGTGGTGATTTTGGAGAGACTACAACGA 357 | |||||||||||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct 299 GTGATTCTCATTCAACGATCGTCA-C----C----GGTGACTTTGGAGAGACTACAACGA 349 Query 358 TGTTTGAGAACAGATTGAATTACTAtggtggtggtggtagtggtagtagtggtggtggtT 417 |||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| Sbjct 350 TGTTTGAGAACAGATTGAATTACTATGGCGGTGGTGGTGGTGGTAGCA---GTGGTGGTT 406 Query 418 GTGTCGTGACTCTATTAGATGGGCAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 477 |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 407 GTGTGGTGACGCTATTAGATGGACAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 466 Query 478 TAAGGCAGAGGAATGTTAATGGTAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 537 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 467 TAAGGCAGAGGAATGTTAATGGGAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 526 Query 538 CTTTGAGTTCTGATAAGAAGTTATATATGGAGGAGACTAGTGTGGAGCTAAGCCCTTCTG 597 || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 527 CTATGAGTTCTGATAAGAAGTTATATGTGGAGGAGACTAGTGTGGAGCTAAGCTCTTCTG 586 Query 598 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGATTAATGGGAATG 657 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 587 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGGTTAATGGGAATG 646 Query 658 TGGTTAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGACC 717 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 647 TGGTGAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGATC 706 Query 718 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 766 Query 778 GTGGGATCTCATTACGGAGCACAACGACTCCTGGGAATGATATCGAGCGCGAAAGAATAT 837 ||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 767 GTGGGATTTCATTACGGAGCACAACGACTCCTGGGAATGATATAGAACGCGAAAGGATAT 826 Query 838 ATGATACAATCTTCCGTTTGCCATGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 897 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 827 ATGATACGATCTTCCGTTTGCCTTGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 886 Query 898 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 946 Query 958 TTATGGATGCATTTAAGAACAGGCAGTTCAGGAGGCCCT-CTGCATCGGAGCTGTCTGAT 1016 ||||||||||| ||||||||||||||||||||||||||| || |||||||| | |||||| Sbjct 947 TTATGGATGCAATTAAGAACAGGCAGTTCAGGAGGCCCTCCT-CATCGGAGTTTTCTGAT 1005 Query 1017 CTGGCTTGTTTTCTAGTTTTGGCCACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1076 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1006 CTTGCTTGTTTTCTAGTTTTGGCTACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1065 Query 1077 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1125 Query 1137 TTAGAGATATTTGATAGACTCTGTCAAAGTTTTTGTGGAGATGTATTTGGAGCCCTATTC 1196 |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 1126 TTAGAGATATTTGATAGACTATGTCAAAGTTTTTGTGGAGATGTATTCGGGGCCCTATTT 1185 Query 1197 AGTTCTGCAAAGGGACTGTCGATTTCTCCTCCTGAGAAACTGAGATTTTCGACTTGGAGA 1256 |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| Sbjct 1186 AGTTCTGCAAAGGGACTGGCGATTTCCCCTCCTGAGAAATTGAGATTTTCGACTTGGAGA 1245 Query 1257 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1305 Query 1317 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1365 Query 1377 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1366 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1425 Query 1437 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTCCACATATCGGCCTTCTTG 1496 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1426 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTTCACATATCGGCCTTCTTG 1485 Query 1497 GTGTCAGTTTTGGCTCAAAATATTCTCGAGTCTGAAGGTGCATGGTTTGGAAA-TTTCAT 1555 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 1486 GTGTCTGTTTTGGCTCAAAATATCCTCGAGTCTGAAGGTGCATGGTTTGGAAACTTT-AT 1544 Query 1556 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1545 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1604 Query 1616 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1605 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1664 Query 1676 CGAGCAGACTTTGAACATTCGTCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1735 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1665 CGAGCAGACTTTGAACATTCGCCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1724 Query 1736 TGCACCTGCTTGTGTGGTGATCCGAGTACTGACACCAGTATACGCAGCACACTTGCCATA 1795 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1725 TGCACCCGCTTGTGTGGTGATCCGAGTACTGACTCCAGTATACGCAGCACACTTGCCGTA 1784 Query 1796 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1785 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1844 Query 1856 GCTCACAAGCCTCAAAGTTCTCATCGGCATGGGACTGAGAAAACATGCAACTTGGTATAT 1915 ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || Sbjct 1845 GCTCACAAGCCTCAAAGTTCTGATCGGCATGGGACTTAGGAAACATGCAACTTGGTACAT 1904 Query 1916 TAATCGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCT-G-AA-GA--- 1969 |||| |||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 1905 TAATAGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCTTGGAATGAAGA 1964 Query 1970 TCATCTTTTGTGATCTTATTATACGTGTTTAAATATTCGATGAAGCGATTTTTGTTGTGG 2029 ||||||| |||||||||| |||||||||||| ||||||||||||| ||||| ||||||| Sbjct 1965 TCATCTTC-GTGATCTTATAATACGTGTTTAA-TATTCGATGAAGCAATTTT-GTTGTGG 2021 Query 2030 TTAGGCATATATACATATGTACAAAGAAAGAGA--CCTCATGGATCATTTGGCAAAA 2084 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2022 TTAGGCATACATACATATGTACAAAGAAAGAGAGACCTCATGGATCATTTGGCAAAA 2078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79646702295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5