BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67980.1 Length=1006 Score E Sequences producing significant alignments: (Bits) Value Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 1181 0.0 Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 616 1e-175 > Ahg475925 jgi|Araly1|475925|fgenesh2_kg.2__1055__AT1G67980.1 Length=878 Score = 1181 bits (639), Expect = 0.0 Identities = 828/912 (91%), Gaps = 41/912 (4%) Strand=Plus/Plus Query 10 CATGGCCAATGAAATTCCTACCAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACAT 69 ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 4 CATGGCCAATGAAATACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACAT 63 Query 70 CATGGAAACGTCAGCGTATCCAAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTAC 129 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 64 CATGGAAACGTCAGCGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTAC 123 Query 130 TGTCCAAAAATACGGAAATTTAAGCGAGATGGAGGTTCCGGTTGATGAGGGTCATTTCCT 189 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 124 TGTCCAAAAATACGGAAATTTAAGTGAGATGGAGGTTCCGGTTGATGAGGGTCATTTTCT 183 Query 190 ATCGATGCTTGTAAAGATCATGAATGCGAAAAACACTATCGAGA-TCGGTGTTTTCACCG 248 |||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||| Sbjct 184 ATCGATGCTTGTAAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCG 242 Query 249 GTTACTCGCTTCTCACTACAGCTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAG 308 | ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 243 GCTACTCACTACTCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAG 302 Query 309 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATTAAGAAGGCTGGTGTTGATC 368 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 303 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATCAAGAAGGCTGGTGTTGATC 362 Query 369 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAGGCCTTAGACCAATTGGTGAACGACA 428 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 363 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACGACA 422 Query 429 AATGTGAGTTTGATTTTGCATTTGCGGATGCTGACAAATCAAGCTACGTCAACTTCCATG 488 ||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| Sbjct 423 AATCTGAGTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATG 482 Query 489 AGAGGCTTCTAAAATTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGT 548 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 483 AGAGGCTTCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGT 542 Query 549 TTGGTTTTGTGGCGGAGGATGAAGATGGAGTTCCGGAGCATATGAGAGAATATAGAGCAG 608 ||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||| Sbjct 543 TTGGTTTTGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG 602 Query 609 CTCTTATAGAATTCAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTT 668 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 603 CTCTTATAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTT 662 Query 669 CCATTGGAGATGGTATCACGCTCTGTAGACGTCTTGTTTGATCAAAAGACTACTTGAAGA 728 |||||||||||||| |||||||||| ||||||||||| ||||||||| | ||| | Sbjct 663 CCATTGGAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAAA--C-ACT--A--- 714 Query 729 GTACGTAGCAGAACCAAAGTCGGAGAGTTTGGAATAAAAGTGTTAGATGGT-TCAATAAC 787 | | || || || |||||||||||||||||||| ||||||| | | ||||| Sbjct 715 ---C-T--CA-AA-----GTTGGAGAGTTTGGAATAAAAGTATTAGATGCTAT-AATAAT 761 Query 788 GACTTCGTCTTTTGTCACAACTTTGCTTGTAATGGTGTGTTTGATTGATGCTCACTCTTT 847 ||||||||||||||| | | | | || | ||| || |||||||| |||||||| Sbjct 762 GACTTCGTCTTTTGT-A-A--T--G---GT---G-TGT-TT-GATTGATGATCACTCTTC 806 Query 848 ATCTTCTTTCTATGTTGTGGTTTCGTCGATGTTGTTCTGTCTG--GCAACAAAACTATTA 905 ||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||| Sbjct 807 ATCTTCTTTCTATGTCGTGGTTTTGTCGATGTTGCTCTGTCTCACGCAACAAAACTATTA 866 Query 906 GTACACTAAATT 917 || ||||||||| Sbjct 867 GTTCACTAAATT 878 > Ahg475924 jgi|Araly1|475924|fgenesh2_kg.2__1054__AT1G67990.1 Length=849 Score = 616 bits (333), Expect = 1e-175 Identities = 573/689 (83%), Gaps = 15/689 (2%) Strand=Plus/Plus Query 31 CAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAGCGTATCC 90 ||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| Sbjct 56 CAAAGGGATTCTCAAGAGCGAGGCTCTTAAACAGTACATTATGGAAACGACAGCGTATCC 115 Query 91 AAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTACTGTCCAAAAATACGGAAATTT 150 ||||||||| | |||||| || ||||||||| ||||||| |||||| ||| || ||||| Sbjct 116 AAGAGAGCACGCATTGCTTAAAGAACTTCGAGAAGCTACAATCCAAAGATATGGCAATTT 175 Query 151 AAGCGAGATGGAGGTTCCGGTTGATGAGGGTC-ATTTCCTATCGATGCTTGTAAAGATCA 209 ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| | Sbjct 176 AAGCGAGATGGAGGTTCCGGTTGATGAAAGTCTATTTC-TATCGATGCTTGTAAAGATAA 234 Query 210 TGAATGCGAAAAACACTATCGAGATCGGTGTTTTCACCGGTTACTCGCTTCTCACTACAG 269 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||| || Sbjct 235 TGAATGCGAAAAACACTATCGAGATCGGTGTGTTCACGGGTTACTCACTTTTCACCGTAG 294 Query 270 CTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAGAAGCTTACG 329 |||||||||| |||||||||||||||||||| |||||||||||||| ||| || |||| Sbjct 295 CTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGACCAAGCAGGTTAC- 353 Query 330 AAGTTGG-ACTAGAGTTTATTAAGAAGGCTGGTGTTGATCACAAGATTAATTTTATCCAT 388 || |||| |||||||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct 354 AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAATTTCATTCAA 413 Query 389 TCCGATGGTCTTA-AGGCCTTAGACCAATTGGTGAACG---ACAAATGTGAGTTTGATTT 444 || |||| | ||| |||| ||||||||||| |||||| | ||| |||| |||||| Sbjct 414 TCTGATGCTGTTAGAGGC-TTAGACCAATTATTGAACGGGGAGAAACAAGAGTATGATTT 472 Query 445 TGCATTTGCGGATGCTGACAA-ATC-AAGCTACGTCAACTTCCATGAGAGGCTTCTAAAA 502 |||||||| |||||||||||| | | || ||| || |||||| ||||| ||| || || Sbjct 473 TGCATTTGTGGATGCTGACAAGA-CGAA-CTATGTTTACTTCCTTGAGAAGCTGCTTAAG 530 Query 503 TTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTTTGTGGCG 562 || ||||||||||| ||||||||||||||||| |||||||| ||||||||| | | Sbjct 531 TTAGTGAAGGTTGGAGGAATCATTGCGTTCGATAACACCTTATGGTTTGGTACTCTAATT 590 Query 563 GAGGATGAAGATGGAGTTCCGGAGC-ATATGAGAGAATATAGAGCAGCTCTTATAGAATT 621 || | ||| | | |||||| ||| ||||||||| ||||||| ||| ||| |||| || Sbjct 591 CAGAAGGAAAACGAAGTTCCA-AGCCATATGAGAGCTTATAGAGAAGCACTTTTAGAGTT 649 Query 622 CAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTTCCATTGGAGATGG 681 ||| |||| ||||| |||||| |||||||| || ||||||| ||||| |||||||| Sbjct 650 CAACAAGATTTTGGCACGGGATCCTCGAGTCGAAATCGCTCAGATATCCATCGGAGATGG 709 Query 682 TATCACGCTCTGTAGACGTCTTGTTTGAT 710 | |||| | || ||||| ||| | |||| Sbjct 710 TCTCACATTATGCAGACGCCTTATATGAT 738 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37398581577 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5