BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68010.2 Length=1449 Score E Sequences producing significant alignments: (Bits) Value Ahg475922 jgi|Araly1|475922|fgenesh2_kg.2__1052__AT1G68010.1 2226 0.0 > Ahg475922 jgi|Araly1|475922|fgenesh2_kg.2__1052__AT1G68010.1 Length=1579 Score = 2226 bits (1205), Expect = 0.0 Identities = 1360/1432 (95%), Gaps = 22/1432 (2%) Strand=Plus/Plus Query 23 AACATATGAACCACA-CCAA--AAAAGAAC-AAAATCGTAGATAATGATCATGCAAAACC 78 ||||||||||||||| | || |||| ||| |||| |||||||||||||||||||||||| Sbjct 1 AACATATGAACCACATCAAATTAAAAAAACAAAAAACGTAGATAATGATCATGCAAAACC 60 Query 79 GACCGTTGGATCTTACTTTCGATTTCAAACCACATAAATCTTAGTGACTGAGCTAAAAAA 138 |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 61 GACCGTTGGATCTTGTTTTCGATTTCAAACCACATAAATCCTAGTGACTGAGCTAAAAAA 120 Query 139 CTGAAATTTTTTAAAAGGCAAGACCTCCTCTGTTTCCATATTCTCACCACAGAAGAACTC 198 ||||| |||||| |||||| | |||||| ||||||||||||| | ||| | Sbjct 121 CTGAACTTTTTTTAAAGGC---A---------TTTCCAAATTCTCACCACAG-A-AACAC 166 Query 199 TTGAGGCTTTCTCTTTTCTCTACCATGGCGAAACCGGTGTCCATTGAAGTGTATAATCCT 258 |||| | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 167 TTGAAGATTTCTCTTTTCTCTGCCATGGCAAAACCGGTGGCCATTGAAGTGTATAATCCT 226 Query 259 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCTGGAACTCGCTGGATCAATCTC 318 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 227 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCGGGTACTCGCTGGATCAATCTT 286 Query 319 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACAATCTTGTCTGTA 378 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 287 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACGATCTTGTCTGTA 346 Query 379 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATCGGTCAGTTGACGGAA 438 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 347 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATTGGTCAGTTGACGGAA 406 Query 439 GATTGGGGAGAGACTCTGTTCTCAGCTTTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 498 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 407 GATTGGGGAGAGACTCTGTTTTCAGCTCTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 466 Query 499 ATGGCCGTTGGTTATAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCTGTC 558 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 467 ATGGCCGTTGGTTACAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCCGTC 526 Query 559 GGTAACACTCCGGGAGTGTTGACTGAGACGACGGCTGAACTAGCTGCTTCTCTTTCCTTG 618 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| || Sbjct 527 GGTAACACACCGGGAGTGTTGACTGAGACGACGGCCGAACTAGCTGCATCTCTTTCCCTG 586 Query 619 GCTGCTGCAAGAAGAATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 678 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 GCTGCTGCAAGAAGGATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 646 Query 679 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAAAGGACAGACTGTTGGAGTTATTGGA 738 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 647 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAATGGACAAACTGTTGGAGTTATTGGG 706 Query 739 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 766 Query 799 ATCTACTTTGATCTTTACCAATCCACTCGTCTTGAGAAATTTGTGACAGCTTATGGACAG 858 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 767 ATCTACTTTGATCTTTACCAATCTACACGTCTTGAGAAATTTGTGACAGCTTATGGACAA 826 Query 859 TTCTTGAAAGCAAATGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 918 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 TTCCTGAAAGCAAACGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 886 Query 919 GTGCTGCGTGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 978 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 GTGCTACGCGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 946 Query 979 CTTGTCAACAAGGAGAGGCTTGCCATGATGAAAAAGGTGGAAGCAATCCTTGTGAACTGC 1038 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 947 CTTGTCAATAAGGAGAGGCTTGCCATGATGAAAAAGG---AAGCAATCCTTGTGAACTGC 1003 Query 1039 AGCAGAGGTCCTGTGATCGATGAGGCAGCTTTGGTCGAACATCTCAAAGAGAACCCGATG 1098 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1004 AGCAGAGGTCCTGTCATCGATGAGGCAGCTCTGGTCGAACATCTCAAAGAGAACCCGATG 1063 Query 1099 TTCCGAGTTGGTCTCGATGTGTTCGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1158 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1064 TTCCGAGTTGGTCTCGATGTGTTTGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1123 Query 1159 ACGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1218 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1124 ATGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1183 Query 1219 ATGGCTACGCTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTACCCGATTTGGCAT 1278 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1184 ATGGCTACACTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTATCCGATTTGGCAT 1243 Query 1279 GACCCGAACCGAGTCGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1338 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1244 GACCCGAATCGAGTGGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1303 Query 1339 AGCATCGTCAACTCAAAGGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1398 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 AGCATCGTCAACTCAAAAGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1363 Query 1399 GAAGGGGAGATTTGGAAGAATCCTTTTA-GTGAATATATGATGGTGTCAAGT 1449 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1364 GAAGGGGAGATTTGGAAGAATCGTTTTAAGTGAATATATGATGGTGTCAAGT 1415 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54202418635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5