BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68160.1 Length=1451 Score E Sequences producing significant alignments: (Bits) Value Ahg475902 jgi|Araly1|475902|fgenesh2_kg.2__1032__AT1G68160.1 1480 0.0 > Ahg475902 jgi|Araly1|475902|fgenesh2_kg.2__1032__AT1G68160.1 Length=1264 Score = 1480 bits (801), Expect = 0.0 Identities = 1033/1141 (91%), Gaps = 31/1141 (3%) Strand=Plus/Plus Query 134 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTGATC-CTTTTTTCATA 192 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 4 CAAGCTTTATCCATGGCGTAAGATGATTCACCTTCTCAAAGTTTG-TCTCTTTTTTCATA 62 Query 193 TCTGATCA-AAGGAGAGTTTTGGGTTTGATTTCTAATTGTTAAAGTTT-TA-ATCTTT-- 247 |||||||| || ||| |||| ||||||||||||| ||||||||||||| | || ||| Sbjct 63 TCTGATCACAA-GAGGGTTTCGGGTTTGATTTCTGATTGTTAAAGTTTAAATATTTTTAG 121 Query 248 TT---ATTTGGGTTT-GTGTTCGATTATGTGGATGGCTACTCAATCAAATTCTGGGTTCG 303 || |||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||| Sbjct 122 TTGAAATTTGGGTTTAGGGTTTGATTATGTGGATGGCTAGTCAATCTAATTCTGGGTTCG 181 Query 304 A-TTCTTTGAGTTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACTTCTTCG 362 | || ||||| |||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 182 AGTT-TTTGAATTCTATGATGAGTCGTCACGCTATTAATTTCCAATCTAACACCTCCTCG 240 Query 363 GAGATGACTCCAATGAGTCCGTACTTGGGGATGAATATGAATATGATCAATGTTGGTTCT 422 ||||||| | | ||||||||||||||||||||| | | |||||||||||||| |||| Sbjct 241 GAGATGATTTCTATGAGTCCGTACTTGGGGATG---A-G--TATGATCAATGTTGCTTCT 294 Query 423 CCTGGTTTTCTTCAAACCGGGAATTCTTCGAATGGTTCCGATTCGGGTTCTGGTCTAAAG 482 |||||||| |||||||||||||||||||||||| ||| ||||||| |||||| || | | Sbjct 295 CCTGGTTTAGTTCAAACCGGGAATTCTTCGAATGCTTCTGATTCGGTTTCTGGCCTCATG 354 Query 483 CTTGATACTTCCATGGTTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGCTGGT 542 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 355 CTTGATACTGCCATGGCTAGTGAATGGTCAAATGAAGAACAATACATATTGGATGATGGT 414 Query 543 CTTGAAAAATATAAGGATATGCCAAGTATTGATATGTATATTCAAATTGGAAACACTTTA 602 |||||||||||||||||||| |||||||| || | |||| ||||||||||||||| |||| Sbjct 415 CTTGAAAAATATAAGGATATACCAAGTATCGAGAGGTATGTTCAAATTGGAAACAGTTTA 474 Query 603 CCTGATAAAAGTATTCGAGATATTGCTTTGCGGTGTAGGTGGCTGAGGAGAAAGAGAAGA 662 |||||||||||| ||||||| |||||||||||||||| |||| ||| |||||||||||| Sbjct 475 CCTGATAAAAGTGTTCGAGACATTGCTTTGCGGTGTATGTGGATGACTAGAAAGAGAAGA 534 Query 663 AAATCAGAAGAATTAAACTGTGGAAGAAGAGCAAGTTCTAGCAAGGGCAAGCAGGTGGAA 722 ||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||| Sbjct 535 AAATCAGAAGAATTAAATTGTGGAAGAAGAACGAGTTCTAGCAAGGACAAGCAGGTGGAA 594 Query 723 TCGTCGTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCATATCCTTTC 782 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 595 TCGTCTTCTAAGTCAAGCATTCCCTCTGTTTTGCCTCATAACATGGCTTCGTATCCTTTC 654 Query 783 TCAGGGCCATCTACAAGCACCAGTAAACAAATTACGTCTGAAGATTTAAGTAGCTATGCA 842 |||| ||| |||||||||||||||||||||||||| ||||||||||||||| || ||||| Sbjct 655 TCAGTGCCCTCTACAAGCACCAGTAAACAAATTACATCTGAAGATTTAAGTGGCCATGCA 714 Query 843 ACAAATCT-TATAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 901 | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 ATAAATCTCT-TAGAACAGAATGTACGAGCTTTTAGTCAAATTAGAGCTAATCTCTCCTC 773 Query 902 ATATAAGGCAGGGGATAACCTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 961 |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 774 ATATAAGGTAGAGGATAACGTAGATCTCTTTCGTCAGGCAAGGAACAACCTTATCACCAT 833 Query 962 CCAAAATGAGATAAATAATATGCCTGGATTGATGAACAAGATGCCACCATTGCCAGTCAC 1021 |||||||| || |||||||||||||| ||||||||| |||||||||||||||| ||||| Sbjct 834 TCAAAATGACATGAATAATATGCCTGGCTTGATGAACCAGATGCCACCATTGCCGGTCAC 893 Query 1022 AATCAATGATGATCTCTCGGTGATGATGCCATTCAATACGATGCAAAGTGGCGGCTTCCA 1081 ||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| Sbjct 894 AATCAATGATGATCTCTCGCTGATG---CCATTCCACACGATGCAAAGTGGCGGCTTCCA 950 Query 1082 TAGGAAGTAGAAGTCTTAGGAAATCATCTGGTTTCCCTTAGTTACCTGTAAATTATCCTA 1141 || |||| ||||| ||| | || ||||||||||||||||| ||||||||||||||||||| Sbjct 951 TACGAAGCAGAAGCCTT-G-AA-TCATCTGGTTTCCCTTAATTACCTGTAAATTATCCTA 1007 Query 1142 AAGAAGCTGGAGGAGGTa-aaaaaaaGCTCATCAAATGTTGGGAAGTTTGTAGAAATGTG 1200 ||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||| Sbjct 1008 AAGAAGCTGGAGGAGA-AGAAAAAAAGCTCATCACATGTTGTGAAGTTTGTAGAAATGTG 1066 Query 1201 ATTCTTTCGTAACACCAACGATCTTTATTGCTGCGCGGGA-TGTTGAAACAAGACATAAT 1259 |||||||| ||||||||| |||||||||||| | ||| | |||||||||| |||||||| Sbjct 1067 ATTCTTTCATAACACCAAGGATCTTTATTGCCGGGCGCCAATGTTGAAACAGGACATAAT 1126 Query 1260 A 1260 | Sbjct 1127 A 1127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54278599125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5