BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68185.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1 1136 0.0 > Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1 Length=926 Score = 1136 bits (615), Expect = 0.0 Identities = 728/782 (93%), Gaps = 9/782 (1%) Strand=Plus/Plus Query 22 AAAATCACAGCAAAATAATATTCAAATTCAAAAT-C-TGTCCAAAT-TCATCTAGGG-TT 77 |||||||||||||||||| || |||||||||||| | | ||||| | |||||||||| || Sbjct 1 AAAATCACAGCAAAATAAAATACAAATTCAAAATCCATATCCAATTCTCATCTAGGGTTT 60 Query 78 TCTGATAAAACAGACGAAGAAGATCCAAA-TTCGCTAACAATGGGAGGTGAAGGAGAAGA 136 |||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 61 TCTGATTAAACAGGCGAAGAAGATCCAAATTTTGCT-ACAATGGGAGGTGAAGGAGAAGA 119 Query 137 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAGCCAGCGAATTTCGTTTGTATCgat-- 194 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 120 TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAACCAGCGAATTTCGTTTGTATTGATGA 179 Query 195 -gatgatgatgatgatgCCTCGGTGACGCCAATTCCGAAGAAAGCGAAAACTTCACAAAC 253 ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| Sbjct 180 CGATGATGATGATGATTCCTCGAAGACGCCGGTTCCGAAGAAAGCGAAAACTTCACAAAC 239 Query 254 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTTACGGGTGATGACGATTGGTT 313 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 240 AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTGGCGGGTGATGACGATTGGTT 299 Query 314 GCTTCCTCCACCAAAGGTTATCTTCGACAAAAGTAAAGACTCTGTTGAAGATTCAACTAT 373 ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 300 GCTTCCTCCGCCAAAGGTTATCTTCGACAAAAATAAAGAGTCTGTTGAAGATTCAACTAT 359 Query 374 TAAAGCATTGAGGTCGAAGAAGATGGAGCTCATGTCATTTACAAAAACTGTAGGAGATGT 433 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 360 TAAAGCATTGAGGTCGAAGAAGATGGAGCTTATGTCATTTACAAAAACTGTAGCAGATGT 419 Query 434 GATGCAGGAAGTTGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCATCTTC 493 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 420 GATGCAGGAAGTGGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCACCTTC 479 Query 494 AGAGACTGCTGCTCAGTTACCATCAGAGCCTACGAATGACAGGGCCAAGATTGTTATTAC 553 |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 480 AGAGGTTGCTGCTCAGTTACCACCAGAGCCTACGAATGACAGGGCCAAGATTGTCATTAC 539 Query 554 AATACAGGACAAAGATGGACAGAAGACACTCCGGGTGTTTGCGGACGAGAAATTTGAGAG 613 |||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||| Sbjct 540 AATACAGGACAAAGATGGACAGAAGACATTCCGGGTTTTTGCGGATGAGAAGTTTGAGAG 599 Query 614 GGTTATCAAACTGTATACAGATAAAGCTAAGCTTGACCCGCAAAATCTTGTATTTATTTT 673 |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || Sbjct 600 GGTTATCAAACTGTATACGGATAAAGTTAAGCTTGACCCGCAAAATCTTGTATTTATATT 659 Query 674 TGACGGTGATAAGATTGATCCATCAACCACTCCTTCTGAACTTGGCATGGAGGATCATGA 733 ||||||||||||||||||||| || ||||| |||||| |||||| ||||||||||||||| Sbjct 660 TGACGGTGATAAGATTGATCCGTCGACCACCCCTTCTCAACTTGACATGGAGGATCATGA 719 Query 734 TATGATTGAAGTGCACACCaaaaaaaCTTGACAAATAGGCGCTAATCGGAATCTGGAATG 793 |||||||||||| ||||||||| ||| ||||||| ||||||| |||||||||||||||| Sbjct 720 TATGATTGAAGTACACACCAAACAAAGATGACAAACAGGCGCTTATCGGAATCTGGAATG 779 Query 794 TC 795 || Sbjct 780 TC 781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38199162834 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5