BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G68185.1

Length=1027
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1        1136    0.0  


> Ahg475936 jgi|Araly1|475936|fgenesh2_kg.2__1066__AT1G68185.1
Length=926

 Score = 1136 bits (615),  Expect = 0.0
 Identities = 728/782 (93%), Gaps = 9/782 (1%)
 Strand=Plus/Plus

Query  22   AAAATCACAGCAAAATAATATTCAAATTCAAAAT-C-TGTCCAAAT-TCATCTAGGG-TT  77
            |||||||||||||||||| || |||||||||||| | | ||||| | |||||||||| ||
Sbjct  1    AAAATCACAGCAAAATAAAATACAAATTCAAAATCCATATCCAATTCTCATCTAGGGTTT  60

Query  78   TCTGATAAAACAGACGAAGAAGATCCAAA-TTCGCTAACAATGGGAGGTGAAGGAGAAGA  136
            |||||| |||||| ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct  61   TCTGATTAAACAGGCGAAGAAGATCCAAATTTTGCT-ACAATGGGAGGTGAAGGAGAAGA  119

Query  137  TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAGCCAGCGAATTTCGTTTGTATCgat--  194
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||  
Sbjct  120  TCTAGAGCCACTTTTTGATTATCGTCGTGTTCAACCAGCGAATTTCGTTTGTATTGATGA  179

Query  195  -gatgatgatgatgatgCCTCGGTGACGCCAATTCCGAAGAAAGCGAAAACTTCACAAAC  253
             ||||||||||||||| |||||  ||||||  ||||||||||||||||||||||||||||
Sbjct  180  CGATGATGATGATGATTCCTCGAAGACGCCGGTTCCGAAGAAAGCGAAAACTTCACAAAC  239

Query  254  AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTTACGGGTGATGACGATTGGTT  313
            |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  240  AGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTGGCGGGTGATGACGATTGGTT  299

Query  314  GCTTCCTCCACCAAAGGTTATCTTCGACAAAAGTAAAGACTCTGTTGAAGATTCAACTAT  373
            ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  300  GCTTCCTCCGCCAAAGGTTATCTTCGACAAAAATAAAGAGTCTGTTGAAGATTCAACTAT  359

Query  374  TAAAGCATTGAGGTCGAAGAAGATGGAGCTCATGTCATTTACAAAAACTGTAGGAGATGT  433
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct  360  TAAAGCATTGAGGTCGAAGAAGATGGAGCTTATGTCATTTACAAAAACTGTAGCAGATGT  419

Query  434  GATGCAGGAAGTTGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCATCTTC  493
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  420  GATGCAGGAAGTGGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCACCTTC  479

Query  494  AGAGACTGCTGCTCAGTTACCATCAGAGCCTACGAATGACAGGGCCAAGATTGTTATTAC  553
            ||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct  480  AGAGGTTGCTGCTCAGTTACCACCAGAGCCTACGAATGACAGGGCCAAGATTGTCATTAC  539

Query  554  AATACAGGACAAAGATGGACAGAAGACACTCCGGGTGTTTGCGGACGAGAAATTTGAGAG  613
            |||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct  540  AATACAGGACAAAGATGGACAGAAGACATTCCGGGTTTTTGCGGATGAGAAGTTTGAGAG  599

Query  614  GGTTATCAAACTGTATACAGATAAAGCTAAGCTTGACCCGCAAAATCTTGTATTTATTTT  673
            |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct  600  GGTTATCAAACTGTATACGGATAAAGTTAAGCTTGACCCGCAAAATCTTGTATTTATATT  659

Query  674  TGACGGTGATAAGATTGATCCATCAACCACTCCTTCTGAACTTGGCATGGAGGATCATGA  733
            ||||||||||||||||||||| || ||||| |||||| |||||| |||||||||||||||
Sbjct  660  TGACGGTGATAAGATTGATCCGTCGACCACCCCTTCTCAACTTGACATGGAGGATCATGA  719

Query  734  TATGATTGAAGTGCACACCaaaaaaaCTTGACAAATAGGCGCTAATCGGAATCTGGAATG  793
            |||||||||||| ||||||||| |||  ||||||| ||||||| ||||||||||||||||
Sbjct  720  TATGATTGAAGTACACACCAAACAAAGATGACAAACAGGCGCTTATCGGAATCTGGAATG  779

Query  794  TC  795
            ||
Sbjct  780  TC  781



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38199162834


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5