BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68190.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475937 jgi|Araly1|475937|fgenesh2_kg.2__1067__AT1G68190.1 1829 0.0
> Ahg475937 jgi|Araly1|475937|fgenesh2_kg.2__1067__AT1G68190.1
Length=1289
Score = 1829 bits (990), Expect = 0.0
Identities = 1136/1207 (94%), Gaps = 7/1207 (1%)
Strand=Plus/Plus
Query 4 AAGCTTTTGTCACCAATCTCTGATCTTTTTAGTTCTCTTATCGGGAGGAATCTTTTATAT 63
|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 1 AAGCTTTTGTCACCAATCTCTGATTTTTTTAGTTCTCTCATCGGGACGAATCTTTTATAT 60
Query 64 GTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAG 123
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 61 GTTATG---GATAATAATTGAGAAAATGGAAAGAGTATGTGAGTTTTGTAAAGCGTTTAG 117
Query 124 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCAAAGGT 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCTAAGGT 177
Query 184 TCATTCAGCTAATTCACTCTCGGGACGGCATTTACGTACGGTTTTATGTGATTCTTGTAA 243
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 178 TCATTCAGCTAATTCGCTTTCGGGACGACATTTACGTACTGTTTTATGTGATTCTTGTAA 237
Query 244 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 297
Query 304 TGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 363
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGATAAGTTTCATGGTGGTGGTTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 357
Query 364 GGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGA 423
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 358 GGGTTGTCCTGCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCAAGTTATGGATGATGA 417
Query 424 TGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTAAACCTAAGGTGCAAAGAGAAGG 483
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 418 TGATGATGTTTCGTTAGAGCAATGTTTTCGAATGGTTAAACCGAAGGTGCAAAGAGAAGG 477
Query 484 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGG 543
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 478 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTGAGAGAAGAGAATGG 537
Query 544 TAGTTCTTCCT-TGACAGAACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCG 602
||||||||| | ||||||||| || |||||||||||||||||||||||| |||||| | |
Sbjct 538 TAGTTCTTC-TGTGACAGAACAAGCTGATCCATCTCCATTGGAGCTTCCGAAGAAATCTG 596
Query 603 AAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACACT 662
|||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 597 AAGAACGGTTAATTGATCTTCCGCAGACCGGAAAAGAGCTGATTGTTGATTTTTCCCACT 656
Query 663 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGA 722
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 657 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGCCCATATAATAAGA 716
Query 723 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTATGTGAAGATACAATCTGCA 782
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTTTGTGAAGATACAATCTGCA 776
Query 783 GTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAAT 842
|||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| |||
Sbjct 777 GTGATGACGACTTCCAAATACCGGACATCGATCTCACTTTCCGAAACTTTGAAGAGGAAT 836
Query 843 TTGGAGCTGATCCTGAGCCAATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTG 902
||||||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||||| |
Sbjct 837 TTGGAGCTGATCCAGAGCCAACTGCAGACAATAAGAACGTCTTCTTTGTTTCTTCCCTAG 896
Query 903 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCTA 962
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAACCCCATATTTGCACCTA 956
Query 963 AACCAGCTTCATCAACTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACT 1022
|||| ||||||||| | || |||||||||||||| ||||||||||||||||| | ||||
Sbjct 957 AACCCGCTTCATCATCCATTTCATTCTCAAGCAGCGAAACCGATAACCCTTACAATCACA 1016
Query 1023 CAGAGGAAGTAATCTCATTTTGTCCCTCC-CTCTCTAACAATACACGTCAAAAGGTCATC 1081
||||||||||||||||||||||| || || |||||||||||| |||||||||||| ||||
Sbjct 1017 CAGAGGAAGTAATCTCATTTTGTTCC-CCTCTCTCTAACAATGCACGTCAAAAGGCCATC 1075
Query 1082 ACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCTTAATATGGTCCC 1141
||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1076 TCAAGGCTCAAGGAAAAGAAGAGAGCACGAGTGGAGGAGAAACAAGCTTAATATGGTCCC 1135
Query 1142 AAGAAAATGGCAGAGTAACACAATTTCTTGCAATGCCTTTGTACATAAGACACTAATCTA 1201
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 AAGAAAATGGCAGAGTAACAAAATTTCTTGCATTGCCTTTGTACATAAGACACTAATCTA 1195
Query 1202 CCTCTTC 1208
|| ||||
Sbjct 1196 CCACTTC 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5