BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68300.1 Length=766 Score E Sequences producing significant alignments: (Bits) Value Ahg475948 jgi|Araly1|475948|fgenesh2_kg.2__1078__AT1G68300.1 963 0.0 Ahg892981 jgi|Araly1|892981|Al_scaffold_0006_977 198 4e-50 Ahg887772 jgi|Araly1|887772|Al_scaffold_0085_1 198 4e-50 > Ahg475948 jgi|Araly1|475948|fgenesh2_kg.2__1078__AT1G68300.1 Length=694 Score = 963 bits (521), Expect = 0.0 Identities = 645/702 (92%), Gaps = 20/702 (3%) Strand=Plus/Plus Query 10 AATCGACACGTCATCATTCTGACTTTTCTCAAAGAAGAG-AAATCAAATCACCAAGTCAT 68 ||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||| Sbjct 1 AATCGACACGTCATCATGCTGACTTTTCTCTATGAAGAGAAAATCAAATCACCAAGTCAT 60 Query 69 CGGAGCGATCACAGA-GAAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCGTGATGAAGC 127 ||||||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||| Sbjct 61 CGGAGCGATCACA-ACGGAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCTTGAAGAAGC 119 Query 128 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTCG 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 120 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTTG 179 Query 188 TGTATCTCAAAGATAGCCTCGCCGATTCCGACATCATCCTCTTCACTGCTCAACCTC-AT 246 | ||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 180 TCTATCTCAAAGATAGCCTCGCCGATTCCGATATTATCCTCTTCACTGCTCAACCTCCA- 238 Query 247 CTTGATCTCAGCTGCGTCTATGCTTCCTCTTATGGCGCCGCTCCGATTGAGCTTATAAAC 306 || ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 239 CTCGATCTCAGCTGTGTTTATGCTTCCTCCTATGGCGCCGCTCCGATTGAGCTGATAAAC 298 Query 307 TCATTGCAAGAGAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATT 366 ||| ||||||||| | ||| |||||||||||||||||| ||||| ||||| ||||||||| Sbjct 299 TCAATGCAAGAGAATTATAGGAACGCTGGATTGAATCGGCTTGAGGAAGGGACCAAAATT 358 Query 367 TGTGCTGAGACTGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCG 426 |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 359 TGTGCTGAGATTGGGGTAACTCCAAGAAAGGTTTTGGAATTTGGAAATCCTAAAGAAGCC 418 Query 427 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTGATATGCTTGTGGTTGGAAGCCATGGTAAA 486 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 419 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTAATATGCTTGTAGTTGGAAGCCATGGTAAA 478 Query 487 GGAGCATTACAAAGGACTTTCCTTGGAAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 546 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 479 GGAGCATTACAAAGGACTTTCCTTGGGAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 538 Query 547 TGCCCAGTTCTTGTGGTGAGAACAAAAGCTTGAAGACCTCTTCTCATGAAAGAGTTCGAG 606 |||||||||||||||||||| |||||||||||||||||||||||||| | | |||| Sbjct 539 TGCCCAGTTCTTGTGGTGAGGACAAAAGCTTGAAGACCTCTTCTCATTA-----T-CGAG 592 Query 607 AACCCTGGCTTGATGTGTGTGT-GTT--GTAAACATATTG---ATAATAATGCTCTGCTT 660 |||||||||||||||||||||| || |||||||||||| ||||||||||||||||| Sbjct 593 AACCCTGGCTTGATGTGTGTGTTGTAAAGTAAACATATTGCTGATAATAATGCTCTGCTT 652 Query 661 GGTTACTATTGTTT---GAAGAAACTTTGTGAGTAAACATAA 699 | ||| || ||||| ||||| |||||||||||| |||||| Sbjct 653 GATTAATACTGTTTTTAGAAGATACTTTGTGAGTACACATAA 694 > Ahg892981 jgi|Araly1|892981|Al_scaffold_0006_977 Length=312 Score = 198 bits (107), Expect = 4e-50 Identities = 125/134 (93%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 318 GAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATTTGTGCTGAGAC 377 |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 108 GAGTCATAAGAATGCTGGATTGAATCGGCTTGATGAAGGAACCAAAATTTGTGATGAGAT 167 Query 378 TGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCGATATGTGAAGC 437 ||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 168 TGGTGTTACTCCAAGAAAGGTGTTGGAATTTAAAAATCCTAAAGAAGCCATATGTGAAGT 227 Query 438 TGCTGAGAAGCTTG 451 |||||||||||||| Sbjct 228 TGCTGAGAAGCTTG 241 > Ahg887772 jgi|Araly1|887772|Al_scaffold_0085_1 Length=351 Score = 198 bits (107), Expect = 4e-50 Identities = 125/134 (93%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 318 GAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATTTGTGCTGAGAC 377 |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 147 GAGTCATAAGAATGCTGGATTGAATCGGCTTGATGAAGGAACCAAAATTTGTGATGAGAT 206 Query 378 TGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCGATATGTGAAGC 437 ||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 207 TGGTGTTACTCCAAGAAAGGTGTTGGAATTTAAAAATCCTAAAGAAGCCATATGTGAAGT 266 Query 438 TGCTGAGAAGCTTG 451 |||||||||||||| Sbjct 267 TGCTGAGAAGCTTG 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28249081497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5