BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68310.1 Length=755 Score E Sequences producing significant alignments: (Bits) Value Ahg475950 jgi|Araly1|475950|fgenesh2_kg.2__1080__AT1G68310.1 1048 0.0 > Ahg475950 jgi|Araly1|475950|fgenesh2_kg.2__1080__AT1G68310.1 Length=727 Score = 1048 bits (567), Expect = 0.0 Identities = 679/729 (93%), Gaps = 24/729 (3%) Strand=Plus/Plus Query 49 AAAATGGTATCTGGGTTGATTAATGAGAACCCTATCATTTACCCAAAGAAAGAGAGGCGT 108 ||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 1 AAAATGGTAACTGGGTTGATTAACGAGAACCCAATCATTTACCCGAAGAAAGAGAGGCGT 60 Query 109 CTTCGTACTGATACAAGCATTACTGATGAGCTTACACCAGAACCAATTGATCAACTTGAG 168 ||||| |||||| |||||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct 61 CTTCGAACTGATTCAAGCACTACCGATGAGTTTACACCAGAACCAATTGATCAACTTGAG 120 Query 169 ATTTTTGATATCC-----TTT----CTT-C-AT-C---------AAATATCAAAGATCCA 207 ||||||||||||| ||| || | || | | |||||||||||||| Sbjct 121 ATTTTTGATATCCTTAATTTTGGGAATTGCAATCCTTTTGTTGTAGATATCAAAGATCCA 180 Query 208 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACAGAAGACTCAGTTGAAGTGGAT 267 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACGGAAGACTCAGTTGAAGTGGAT 240 Query 268 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTCGAACATTGTAGCATGGCA 327 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 241 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTGGAACATTGTAGCATGGCA 300 Query 328 ACCGTTATCGGTCTTTGTGTCCGTGTGAAACTTCTACGAAGCCTTCCTTCTCGATACAAG 387 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 301 ACCGTTATCGGTCTTTGTGTCCGCGTGAAACTTCTGCGAAGCCTTCCTTCTCGATACAAG 360 Query 388 ATTGATATAAGGGTAGCACCTGGTTCTCATGCAACAGAAGATGCATTGAATAAACAACTA 447 ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 ATTGATATACGGGTAGCGCCTGGTTCTCATGCAACAGAGGATGCATTGAATAAACAACTA 420 Query 448 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTCGTGGAGATGGTTGAT 507 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 421 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTTGTGGAGATGGTCGAT 480 Query 508 GAATGCCTGCCATCAGAAGAGTGAATTGCTTTTATTTTCTTGTGAGCAAGTAATTTACAC 567 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 481 GAATGCCTGCCATCAGAAGAGTGAATTGTTTTTATTTTCTTGTGAGCAAGTAATTTACAC 540 Query 568 AAGCCTGGTGGTCTCAGTTTACACTATCAATACATGTCTCTGTTTTATTTGCAAAGATTT 627 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 AAGCCTGGTGGTCTCAGTTTACACTAACAATACATGTCTCTGTTTTATTTGCAAAGATTT 600 Query 628 TGATCCATCACATCGACTAGGACTTGCATTGTAATACTTACTCTGATTTCAAGTTTGTTC 687 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 601 TGATCCATCACATCGACTAGGACT-GCATTGTAATTCTTACTCTGATTTCAAGTTTGTTC 659 Query 688 TCAATCATTTCAATAAAGTCTCAA-ACACAAGTTCTTTTTAATAAAAGTTGACGTGTCAT 746 |||||||||||||||||||||||| | |||| ||||||||| |||||||||| ||||||| Sbjct 660 TCAATCATTTCAATAAAGTCTCAATA-ACAATTTCTTTTTACTAAAAGTTGAAGTGTCAT 718 Query 747 TTCGATTTC 755 ||||||||| Sbjct 719 TTCGATTTC 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829729410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5