BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68440.1 Length=1241 Score E Sequences producing significant alignments: (Bits) Value Ahg475964 jgi|Araly1|475964|fgenesh2_kg.2__1094__AT1G68440.1 1842 0.0 > Ahg475964 jgi|Araly1|475964|fgenesh2_kg.2__1094__AT1G68440.1 Length=1219 Score = 1842 bits (997), Expect = 0.0 Identities = 1166/1242 (94%), Gaps = 33/1242 (3%) Strand=Plus/Plus Query 10 ttttttCTCTCTTTCTCATAACAACaaaaaaacaaaaaaaaaaCCTAATTAGTTTT-TTC 68 |||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| ||| Sbjct 1 TTTTTT-TCTCTTTCTCAT---AACAAAAAAA-AAAAAAAAACCCTAATTAGTTTTCTTC 55 Query 69 TTTCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 128 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 TTCCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 115 Query 129 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 175 Query 189 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATCGCATTTCTAGCTT 248 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 176 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATTGCATTTCTAGCTT 235 Query 249 ATTTCACCAACTTTGTTAGTAAACTCAACAGTCTAGTTGTTAGGTTAAGAAAAATAGATG 308 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 236 ATTTCACAAACTTTGTTAGTAAACTCAACAGTTTAGTTGTTAGGTTAAGAAAAATAGATG 295 Query 309 TCTCTGTTTCCTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 368 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCTCTGTTTCTTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 355 Query 369 CCTCTACCGTCTCCTCTGACGATGAAAAAGACGAAGAAGATGAGGCTGATGATGAAGATG 428 | ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 356 CGTCTACCGTCTCATCTGACGATGAAGAAGACGAAGAAGATGAGGATGATGATGAAGATG 415 Query 429 AGGATGTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTTAGAGGAT 488 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 416 AGGATGTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTGAGAGGAT 475 Query 489 CTGATTATTACGATGATGATGATGATCAGGGAGACAATGGTAATTGCACATGGATGGGGA 548 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 476 CTGATTATTATGATGATGATGATGGTCAGGGAGAAAATGGTAATTGCACATGGATGGGGC 535 Query 549 GGCGATATAGTGGTAGTTTTGGAGATTTGTTCTCATGGCCTGATCTTGGTGGGATTGGTT 608 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 536 GGCGATGTAGTGGTAGTTTTGGAGATTTGTTCTCGTGGCCTGATCTTGGTGGGATTGGTT 595 Query 609 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATCGATGGCGATGAT------CATG 662 ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 596 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATTGATGGCGATGATGATGATCATG 655 Query 663 AGAATGTTGTGGCAACGTTTCTCAAGAACTATAACTCAACCTCGTCACCGtttttttGGG 722 ||||||||||||| |||||||||||||| | || ||| |||||||| | ||||||||| Sbjct 656 AGAATGTTGTGGCCACGTTTCTCAAGAATTGTAGCTCGACCTCGTCTC--TTTTTTTGG- 712 Query 723 CGGCGGAGAAAAAAGGTGTTGACGCCGTTAAAGTGAAGGCGTGTGATCCACGCGCCGGTT 782 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 713 CGGCGGAGAAGAAAGGTGTTGACGCCGTTAAAGTGAATGCGTGTGATCCACGCGCCGGTT 772 Query 783 TTCGGATGCCGGCTTTGCTCGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATAA 842 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 773 TTCGGATGCCGGCTTTGCTTGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATTA 832 Query 843 TCGGAGTTGATACCGGTGGTGTGGAGAAAGTATACGTCAGGGATGATGTTAGCGGAGAGA 902 ||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 833 TCGGAGTTGATGCTGGTGGTGTGGAGAAAGTTTACGTCAGGGATGATGTTAGTGGAGAAA 892 Query 903 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 952 Query 963 CTGAGACTTGGTGGGACGCTGACGTCCTTATCTCGGGCTGATGGAATCCTTGACGAGAGA 1022 |||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||| Sbjct 953 CTGAGACTTGGTGGGACGCTGACGTCGTTATCTCGGGCTGACGGATTTGTTGACGAGAGA 1012 Query 1023 AAATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGG-ACGGACGAAAGATTCAACGC 1081 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1013 AGATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGGGACGGACGAAAGATTCAACGC 1072 Query 1082 CAAAAAGAAGTGTTAAAGATTAATGAGAACGACGCAACGTTTTGTAAATAATTTGTCTGT 1141 |||| | ||| ||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 1073 -AAAA-G---TGTAAAAGA--A-TGAGAACGACGCAACATTTTGTAAATAATTTGTCTGT 1124 Query 1142 TTGCTTCTCTGCGATTTTTATTTTAAAATTTTAGTTTTGATTGAATAAAAATCAGCGTCA 1201 ||||||||||||||||| ||||||||||||||||||||||| |||||||| | | ||| Sbjct 1125 TTGCTTCTCTGCGATTT--ATTTTAAAATTTTAGTTTTGATTAAATAAAAA-C--C-TCA 1178 Query 1202 GATTAATAAAAGTGTT--TGTGTGTTTGGTCGGTTACTAGTT 1241 ||||||||| ||||| |||||||||||||||||||||||| Sbjct 1179 TATTAATAAA-GTGTTCGTGTGTGTTTGGTCGGTTACTAGTT 1219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46357467072 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5