BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68520.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926133 jgi|Araly1|926133|scaffold_201694.1 1893 0.0
> Ahg926133 jgi|Araly1|926133|scaffold_201694.1
Length=1405
Score = 1893 bits (1025), Expect = 0.0
Identities = 1294/1418 (91%), Gaps = 41/1418 (3%)
Strand=Plus/Plus
Query 13 CTCTCTTTTTATAACCACTTCTCGAAAACTGAAACCTTTGTAGAGAGAACCCATAGTTCG 72
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1 CTCTCTTTTTATAACCACTTCTCGGAAACTGAAACCTTTGTAGAGAGAACTCATAGTTCG 60
Query 73 ATAAAACATTCTTTTTGCAACTGAGACTTGGCAACTTGGTTTTACTCAAAGTAAGATTTC 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ATAAAACATTCTTTTTGCAACTGAGACTTGGCAACTTGGTTTTACTCAAAGTAAGGTTTC 120
Query 133 TTCTTGTTGATGGTGATAAGT-TCAATATGATGAAAAGTTTGGCTAGTGCGGTTGGAGGG 191
|||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 121 TTCTCGTTGATGGTGATAAGTAT-AATATGATGAAAAGTTTGGCTAGTGCGGTCGGAGGG 179
Query 192 AAGACGGCGAGGGCATGTGATAGCTGCGTGAAGAGGCGGGCACGTTGGTATTGCGCAGCT 251
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 180 AAGACGGCGAGGGCATGTGATAGCTGCGTGAAGAGGCGGGCACGCTGGTATTGCTCAGCT 239
Query 252 GATGATGCCTTTCTTTGCCATGCTTGTGACGGTTCGGTCCACTCGGCAAACCCTCTTGCT 311
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GATGATGCCTTCCTTTGTCATGCTTGTGACGGTTCGGTCCACTCGGCGAACCCTCTTGCT 299
Query 312 CGTAGGCACGAGAGAGTTCGCTTGAAATCGGCTAGCGCCGGAAAGTATCGCCA------- 364
|||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||
Sbjct 300 CGTAGGCACGAGAGGGTTCGCTTGAAGTCGGCTAGCTCCGGGAAGCATCGCCACGCTTCC 359
Query 365 T--GCCTCGCCGCCTCACCAAGCCACGTGGCATCAGGGATTTACACGTAAAGCTCGGACC 422
| |||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTCCTCACCGTCTCACCAATCTACGTGGCATCAGGGATTTACACGTAAAGCTCGGACC 419
Query 423 CCACGTGGAGGCAAGAAGAGCCACACGATGGTTTTTCATGATCTTGTGCCGGAGATGAGC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCACGTGGAGGCAAGAAGAGCCACACGATGGTTTTTCATGATCTTGTGCCGGAGATGAGC 479
Query 483 ACGGAGGATCAAGCGGAGAGTTACGA----G--GTGGAAGAGCAGCTCATATTTGAGGTG 536
|| || |||| |||||||| ||||| | ||||||||||||||||| || ||||||
Sbjct 480 ACAGAAAATCAGGCGGAGAGCTACGAGGTGGAAGTGGAAGAGCAGCTCATCTTCGAGGTG 539
Query 537 CCGGTGATGAACTCGATGGTTGAGGAGCAATGCTTTAACCAATCCCTGGAGA-AACAGAA 595
|||||| ||||| |||||||||||||||| |||||| |||||||| |||||| || ||
Sbjct 540 CCGGTGCTGAACCCGATGGTTGAGGAGCACTGCTTTCACCAATCCGTGGAGACAA-AG-G 597
Query 596 T-GAGTTTCCAATGATGCCCTTAAGTTTCAAGA-GTAGTGACGAAGAAGATGACGACAAC 653
| |||||||| |||||||||||||||||||| | | || |||||||||||||| ||||||
Sbjct 598 TCGAGTTTCCGATGATGCCCTTAAGTTTCAA-ATGCAGCGACGAAGAAGATGAAGACAAC 656
Query 654 GCTGAGAGTTGTCTGAATGGTTTGTTCCCAACCGACATGGAACTAGCTCAGTTCACAGCT 713
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 657 GCTGAGAGTTGTCTGAATGGTTTGTTCCCAACCGACATGGAACTGGCTCAATTCACAGCT 716
Query 714 GACGTGGAGACTCTACTCGGTGGA-GG--GGATCGAGAGTTTCATTCCATAGAAGAACTA 770
||||||||||||||||| |||||| || ||| ||||||||||||||||||||||| |||
Sbjct 717 GACGTGGAGACTCTACTTGGTGGAGGGATGGAGCGAGAGTTTCATTCCATAGAAGAGCTA 776
Query 771 GGGTTAGGTGAGATGTTAAAGATCGAAAAAGAGGAGGTGGAGGAAGAGG--G-AGTTGTG 827
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 777 GGGTTAGGTGAGGTGTTAAAGATCGAAAAAGAGGAGGTGGAGGAAGAGGAAGTAGTTGTG 836
Query 828 ACAAGAGAAGTGCATGATCAAGATGAAGGTGATGAGACATCCCCATTTGAAATAAGCTTT 887
|||||||||||| |||||| |||||||| ||| ||||| || ||||||||||||||||||
Sbjct 837 ACAAGAGAAGTGTATGATCTAGATGAAGCTGAAGAGACTTCTCCATTTGAAATAAGCTTT 896
Query 888 GACTACGAGTACACACACAAGACCACAT-TCgatgaaggagaagaagatgagaaagaaga 946
|||||||||| | |||||||||| |||| | || |||| |||||||||| ||||||||||
Sbjct 897 GACTACGAGTTCGCACACAAGACGACATAT-GAAGAAGAAGAAGAAGATAAGAAAGAAGA 955
Query 947 cgtgatgaagaatgtg-atgga-gatgggagtgaatgagatgagTGGTGGGATTAAAGAA 1004
|||||||||||| | ||||| | ||| ||||||||||||||||||| ||||||| |||
Sbjct 956 TGTGATGAAGAAT-AGAATGGATG-TGGTAGTGAATGAGATGAGTGGTAGGATTAAGGAA 1013
Query 1005 GAGAAGAAGGAGAAGGCTCTTATGCTTAGATTGGACTATGAATCAGTCATTTCCACTTGG 1064
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1014 GAGAAGAAGGAGAAGGCTCTTATGCTTAGATTGGACTACGAATCTGTGATTTCCACTTGG 1073
Query 1065 GGAGGCCAAGGGATCCCATGGACCGCCCGGGTGCCATCTGAAATAGACCTCGACATGGTT 1124
||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||
Sbjct 1074 AAAGGCCAAGGGATCCCATGGACCGACCGAGAGCCATCTGAAATTGACCTCGACATGGTT 1133
Query 1125 TGTTTCCCAACCCATACCATGGGTGAAAGTGGAGCAGAGGCTCATCATCACAACCACTTC 1184
|||| |||||||||| || ||||||||||| | | |||||||||||||||||| ||||||
Sbjct 1134 TGTTGCCCAACCCATTCCTTGGGTGAAAGT-G-G-AGAGGCTCATCATCACAATCACTTC 1190
Query 1185 CGCGGCCTAGGGTTACACCTAGGAGATGCTGGGGATGGAGGAAGAGAGGCTAGGGTTTCA 1244
|||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1191 CGCGGCCTAGGGTTACACATGGGAGAGGCTGGTGATGGAGGAAGAGAGGCTAGGGTTTCA 1250
Query 1245 AGATACCGAGAGAAAAGGAGGACAAGGTTGTTCTCCAAGAAGATAAGGTACGAGGTACGT 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1251 AGATACCGAGAGAAAAGGAGGACAAGGTTGTTCTCCAAGAAGATAAGGTACGAGGTGCGT 1310
Query 1305 AAATTGAATGCAGAGAAAAGGCCTCGCATGAAAGGAAGGTTCGTCAAGAGATCTTCAATT 1364
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1311 AAATTGAATGCAGAGAAAAGGCCCCGCATGAAAGGAAGGTTCGTGAAGAGATCTTCAATA 1370
Query 1365 GGTGTTGCTCACTAAAGAACTTAATTAATTATGGATAT 1402
||||||||||||||||||| || || ||||||||||
Sbjct 1371 GGTGTTGCTCACTAAAGAA---AACTAGTTATGGATAT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5