BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68570.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475979 jgi|Araly1|475979|fgenesh2_kg.2__1109__AT1G68570.1 3175 0.0
> Ahg475979 jgi|Araly1|475979|fgenesh2_kg.2__1109__AT1G68570.1
Length=2000
Score = 3175 bits (1719), Expect = 0.0
Identities = 1910/2002 (95%), Gaps = 14/2002 (1%)
Strand=Plus/Plus
Query 1 CAACACTTACAAGTTTTACAACAAACGTAATATATAAAACATTACTAATTATTACAAGAA 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 CAACACTTACAAGTTTTACAACAAACTTAATATATAAAACATAACTAATTATTACAAGAA 60
Query 61 ACAATCAGAAACATCATGGAGGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACTCAGAAACATCATGGAAGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120
Query 121 CTCCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTC-G- 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTTCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTCGGT 180
Query 179 -CGAACGAGATATGTGAAAAATTAGCGGTGGTGGGGTTTCACGCAAACATGATAAGTTAC 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 ATGAACGAGATATGTGAAAAATTAGCGGTGGTTGGGTTTCACGCAAACATGATAAGTTAC 240
Query 238 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 300
Query 298 GGGACATCGAGTCTTACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGA 357
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAACTTCGAGTCTCACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGG 360
Query 358 TTTTGGACCATCACTTTTGCTTCCATCATCTACCAAATCGGGATGACGTTGCTTACGATA 417
|| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 361 TTCTGGACCATCACGTTTGCTTCCATCATCTACCAAGTCGGGATGACTTTGCTTACGATA 420
Query 418 TCGGCAATAATACCAACGCTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGCAATAATACCAACGTTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 480
Query 478 GCTGACACAGCACAATTGAGTATACTT-TACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 536
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 481 GCTGACACAGCACAATTGAGTATA-TTATACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 539
Query 537 GGGTGGGATCCGACCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 596
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGTGGGATCCGGCCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 599
Query 597 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGTGCAGC 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGAGCAGC 659
Query 657 AGTTTTACTGGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTTTTACTAGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 719
Query 717 TTTAGGCATTCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTTCA 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TTTAGGCATCCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTCCA 779
Query 777 ACTTTACCGTCACTTGGTTCCCGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 836
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCTTTATCGTCACTTGGATCCTGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 839
Query 837 CGCGGCATTTCGCAAAAGGAAACTGAGGATGGTTTCTGATCCCTCTCTTCTCTATTTTAA 896
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 840 CGCGGCGTTTCGTAAAAGGAAACTGAGGATGGTTTCTGATCCTTCTCTTCTCTATTTCAA 899
Query 897 CGACGAGATTGATGCACCTATCTCCTTAGGTGGTAAACTCACCCACACCAAACACATGAG 956
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CGATGAGATTGATGCTCCTATCTCCTTAGGTGGTAAACTTACCCACACCAAACACATGAG 959
Query 957 TTTCTTGGACAAGGCGGCAATAGTAACGGAGGAAGACAATTTAAAACCGGGTCAAATCCC 1016
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 960 TTTCTTGGACAAGGCGGCAATAGTAACGGAGCAAGACAATTTGAAACCGGGCCAAATCCC 1019
Query 1017 AAACCATTGGAGGCTAAGCACAGTCCATCGAGTCGAAGAACTCAAATCCGTCATCCGAAT 1076
|||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||
Sbjct 1020 CAACCATTGGAGGCTAAGCACAGTCCACCGGGTCGAAGAACTCAAATCGGTGATCCGAAT 1079
Query 1077 GGGTCCAATCGGAGCATCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1136
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGGTCCAATCGGAGCCTCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1139
Query 1137 CTCATTACAACAAGCCAAAACCATGAACCGTCACCTAACAAACTCCTTCCAAATCCCAGC 1196
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 CTCACTACAACAAGCCAAAACCATGAACCGTCATCTAACAAACTCCTTCCAAATCCCAGC 1199
Query 1197 CGGTTCAATGTCCGTCTTCACAACCGTCGCTATGCTTACCACAATCATCTTCTACGACCG 1256
|||||||||||| |||||||||||| |||| ||||||||||||||| |||| ||||||||
Sbjct 1200 CGGTTCAATGTCAGTCTTCACAACCATCGCAATGCTTACCACAATCGTCTTTTACGACCG 1259
Query 1257 CGTCTTCGTCAAAGTCGCTCGCAAATTCACCGGTCTCGAAAGAGGCATCACGTTCCTCCA 1316
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1260 CATTTTCGTCAAAGTCGCTCGCAAATTCACCGGACTCGAAAGAGGCATCACGTTCCTTCA 1319
Query 1317 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGTTAGTTGCCGGATTCGTCGA 1376
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1320 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGCTAGTCGCCGGATTCGTCGA 1379
Query 1377 AGTAAAGCGAAAGAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1436
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AATCAAGCGAAAAAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1439
Query 1437 TCCAATCTCGTTTCTTTGGTTGATTCCTCAATATGGTCTCCATGGAGTCGCTGAAGCTTT 1496
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1440 TCCAATCTCGTTTCTTTGGTTGATTCCTCAGTACGGTCTCCATGGAGTCGCCGAAGCTTT 1499
Query 1497 CATGTCCATCGGACATTTAGAGTTCTTCTACGATCAGGCACCGGAGAGTATGAGGAGCAC 1556
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1500 CATGTCGATCGGACATTTAGAGTTCTTCTACGATCAGGTGCCGGAGAGTATGAGGAGCAC 1559
Query 1557 GGCAACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTGGT 1616
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1560 GGCGACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTAGT 1619
Query 1617 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1679
Query 1677 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACTGTGTTACAAGCTGTTAA 1736
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1680 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACAGTATTACAAGCTGTTAA 1739
Query 1737 TCTTGTGTATTATCTATGGTGCGCCAAGATTTATACGTATAAACCGGTTCAGGTTCATCA 1796
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1740 TCTTGTGTATTATCTATGGTGCGCCAAGATTTACACGTATAAACCGGTTCAGGTGCATCA 1799
Query 1797 TAGCAAGGAAGATAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCAAATAGGAGTTTAGT 1856
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1800 TAGCAAGGAAGAGAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCCAATAGGAGTTTAGT 1859
Query 1857 TGATGAATGAGTCTTGGCGTTGGATGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1916
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1860 TGATGCATGAGTCTTGG-GTTGGGTGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1918
Query 1917 ATATGTACTTATCAATCCA-ATA-A-A-T---T-AGAAAGAATGACTTTGTCCATTGTTG 1968
||||||| ||||||||| | ||| | | | | ||||||||||||||||||||||||||
Sbjct 1919 ATATGTATTTATCAATCTATATATATAATAAATTAGAAAGAATGACTTTGTCCATTGTTG 1978
Query 1969 TGGGTGTTCAATATTGATAAAC 1990
||||| ||||||| |||||||
Sbjct 1979 TGGGTTTTCAATACGGATAAAC 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5