BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68620.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475988 jgi|Araly1|475988|fgenesh2_kg.2__1118__AT1G68620.1 1565 0.0
> Ahg475988 jgi|Araly1|475988|fgenesh2_kg.2__1118__AT1G68620.1
Length=1092
Score = 1565 bits (847), Expect = 0.0
Identities = 1022/1104 (93%), Gaps = 21/1104 (2%)
Strand=Plus/Plus
Query 12 aaaaGCTCTCTTTGTGGATCACGAAACTATACACAAATTCACACATAAAATTTAGAAAAT 71
||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||
Sbjct 1 AAAAGCTCTCTTTGTGGATCACGAAAC--TACACAAA-TCACACATAAAAATCAGAAAAT 57
Query 72 ATGGGAGGCACAAAATTGACCCATGTGACCACCACTAACCCTAATAACTCCAACATTCAT 131
||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 58 ATGGGAGCCACCAAATTGACCCATGTGACCACCATTAACCCTAATAACACCAACATTCAT 117
Query 132 GGACCAGTCGTAGACGAAGTAGAAGGCCTTATTAAAGTTTACAAAGATGGCCACGTGGAA 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGACCAGTCGTAGACGAAGTAGAAGGCCTTATTAAAGTTTACAAAGATGGCCACGTGGAA 177
Query 192 CGATCCCAGCTCTTGCCATGTGTTGATCCCTCACTACCCCTCGAGCTCGGCGTGACTTGC 251
|||||||||||| |||| ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 178 CGATCCCAGCTCGTGCCGTGTGTTGGTCCCTCACTACCCCTAGAGCTCGGCGTGGCTTGC 237
Query 252 TCCGATGTTGTTATAGACAAGTTGACCAACGTATGGGCACGTCTCTATGTCCCGATGA-- 309
|| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 238 TCTGATGTTGTCATAGACAACTTGACCAACGTATGGGCACGTCTCTACGTCCCGATGATG 297
Query 310 -CCACGACCAAGTCGTCGGTCTCTAAGCT-C--CCTTTGATTGTTTACTTCCACGGTGGA 365
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 298 GCCACGACCAATTCGTCGGTCTCTAAGCTACTACCTTTGATTGTTTACTTCCACGGTGGA 357
Query 366 GGATTCTGCGTCGGCTCGGCTTCTTGGTTGTGTTACCACGAGTTCTTGGCTAGATTGTCC 425
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GGATTCTGCGTTGGCTCGACTTCTTGGTCGTGTTACCACGAGTTCTTGGCTAGATTGTCC 417
Query 426 GCTCGCTCGCGGTGCTTGGTTATGTCTGTAAATTACCGTCTAGCCCCAGAGAACCCTCTT 485
||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||
Sbjct 418 TCTCGCTCGCGGTGCTTGGTTATGTCTGTAGATTACCGTCTAGCCCCTGAAAATCCTCTT 477
Query 486 CCAGCAGCTTACGAAGATGGGGTCAATGCCATTCTTTGGCTCAACAAAGCAAGAAACGAT 545
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 CCGGCAGCTTACGAAGATGGGGTCAATGCCATTCTTTGGCTTAACAAAGCAAGAAACGAT 537
Query 546 AACTTGTGGGCCAAGCAATGTGACTTTGGCAGAATATTCTTGGCAGGAGATAGCGCTGGA 605
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 538 AACTTGTGGGCCAAGCAATGTGATTTTGGCAGAATATTCTTGGCCGGAGATAGCGCTGGA 597
Query 606 GGCAACATCGCGCAGCAAGTCGCGGCAAGATTAGCATCCCCCGAAGATCT-AGCACTGAA 664
|||||||||||| | |||||||| ||||||||||||||| |||||||||| | |||||||
Sbjct 598 GGCAACATCGCGGACCAAGTCGCAGCAAGATTAGCATCCACCGAAGATCTCA-CACTGAA 656
Query 665 GATAGAAGGAACCATCCTGATCCAACCTTTCTACAGCGGAGAGGAGCGTACGGAGAGTGA 724
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 GATAGAAGGAACGATCCTGATCCAACCTTTCTACGGCGGAGAGGAGCGTACGGAGAGTGA 716
Query 725 GAGGCGCGTGGGGAACGACAAAACAGCGGTGCTGACACTGGCGTCGTCCG-ACGCATGGT 783
|| ||||||||| ||| |||||| | ||||| ||||||| | || || |||| ||||
Sbjct 717 GAAGCGCGTGGGTAACAACAAAAGTTCAGTGCTTACACTGGAGG-GTTCGGACGCGTGGT 775
Query 784 GGAGGATGTCTTTGCCACGTGGTGCAAACAGAGAGCATCCTTATTGTAAACCTGTGAAGA 843
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 776 GGAGGCTGTCTTTGCCGCGGGGTGCAAACAGAGAGCATCCTTATTGTAAACCGGTGAAGA 835
Query 844 TGATCATCAAGTCGTCGACGGTGACAAGGACGCTGGTGTGCGTGGCCGAGATGGATCTGC 903
| | | | |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 836 T--T-A--A-GTCGTCGACGGTGATAAGGACGCTGGTGTGCGTGGCCGAGATGGATTTGC 889
Query 904 TCATGGACAGCAACATGGAGATGTGCGATGGTAATGAGGACGTGATCAAGCGCGTGTTGC 963
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 890 TGATGGACAGAAACATGGAGATGTGCGATGGTAATGAGGAAGTGATCAAGCGCGTGGTGC 949
Query 964 ACAAAGGCGTTGGTCACGCGTTTCATATTCTCGGAAAGTCTCAGCTTGCTCACACCACAA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACAAAGGCGTTGGTCACGCGTTTCATATTCTCGGAAAGTCTCAGCTTGCTCACACCACAA 1009
Query 1024 CTCTGGAGATGTTGTGCCAGATCGACGCTTTTATCCACCACTACGATCCCTT-AAATTAG 1082
|||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||
Sbjct 1010 CTCTAGAGATGTTGTGCCACATCGACGCTTTTATCCACCACGACGATCCCTTGAAAT-AG 1068
Query 1083 TTCTGTATTAGTATATATTATTTT 1106
||||||||| ||||| ||||||||
Sbjct 1069 TTCTGTATTTGTATAAATTATTTT 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5