BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68670.1 Length=1583 Score E Sequences producing significant alignments: (Bits) Value Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 1661 0.0 Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 193 4e-48 Ahg920209 jgi|Araly1|920209|scaffold_101490.1 161 1e-38 Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 106 6e-22 > Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 Length=1432 Score = 1661 bits (899), Expect = 0.0 Identities = 1163/1282 (91%), Gaps = 52/1282 (4%) Strand=Plus/Plus Query 130 AAACCTAAAC-C-ctctctc--tctctctctctctctctatctctTGAAAAATCAACAAA 185 ||||| |||| | ||||||| ||||| ||||| |||||||||||| |||| | |||| Sbjct 36 AAACCAAAACTCTCTCTCTCTATCTCTATCTCTATCTCTATCTCTT--CAAAT-ATCAAA 92 Query 186 ACATTGGAATCAATTTCTCTATGTTTTGATTCTATTTTAAAGATCCAATATTCTTTCTCC 245 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 93 ACATTGGAATCAATTTCTCTATGTTTTGATTCCATTTTAAAGATCCAATATTCCTTCTCC 152 Query 246 A-TTG-AGATTAAGCTTCTTTC-TCGCTGTCGTCTCTCTATAGATCTTGGTTCTTAGTCC 302 | ||| | | |||||||||||| |||||||||||||||| ||||||||||||||| |||| Sbjct 153 ATTTGAAAAGTAAGCTTCTTTCTTCGCTGTCGTCTCTCTGTAGATCTTGGTTCTTGGTCC 212 Query 303 CTTTTGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 213 CTTTAGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 272 Query 363 ATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 422 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 273 ATACGTTGAAGCACTTGAAGAAGAACAAAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 332 Query 423 TTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTAC 482 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 333 TTTATGTTTAGAGCTTGTTACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGT-- 390 Query 483 GACGACAACTACATCAGAACAGTGTTCAGAACAGACCACAAGTGTTTGTGGTGGTCCTGT 542 |||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 391 -ACGACAACAACATCAGAACAGTGTTCGGAACAGACAATAAGTGTTTGTGGTGGTCCTGT 449 Query 543 CTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTgaagaagtacaagaaga 602 ||||||||||||||||||||||||| || || | | || | | || ||||| Sbjct 450 CTTTGAAGAGTTTATTCCTATCAAG--AA-GAGGT-C--GT-T---G-TGT----GAAGA 494 Query 603 agaagaagaagaTGGTGAACATGAATCTTCTCCAGAACTT-----G--T-G-AATAATAA 653 |||||||||||||||||||||||||||||||||||| ||| | | | |||||||| Sbjct 495 AGAAGAAGAAGATGGTGAACATGAATCTTCTCCAGAGCTTGAACAGATTGGTAATAATAA 554 Query 654 GAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAAT-CATTCACCGGATCTAAATCCAA 712 |||||| ||||||||||||||||||||| |||||| | || ||||| ||||| || || | Sbjct 555 GAAATCTGATTGGCTTAGATCTGTTCAGTTATGGACTCCA-TCACCAGATCTTAACCCGA 613 Query 713 AAGAGGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTGCGT 772 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 614 AAGAGGAGCGTGTAGTTAAGAAAGCGAAAGTGGTGGAGGTGACACCAAAAAGCGGTGCGT 673 Query 773 TTCAGCCGTTTC-AAA--AG------CGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 823 |||||||||||| ||| || |||||||||||||||||||||||||||||||||| Sbjct 674 TTCAGCCGTTTCAAAAGGAGAAAAAACGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 733 Query 824 AAGTAGCTAGTTCGATGCCAGCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTA 883 ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| || Sbjct 734 AAGTAGCTAGTTCGACGCCGGCGACGACGACGAGTTCTACGACGGAAACTGGTGGTGCTA 793 Query 884 AAAGTGATTTGATTAAAGCT-GGAGATGAGGAAAGACGGATAGAGCAGCAGCAATCGCAG 942 ||||||| ||| |||||| | ||||| ||| | |||| |||||||||||||||||||||| Sbjct 794 AAAGTGAGTTGGTTAAAG-TGGGAGAGGAGCAGAGACAGATAGAGCAGCAGCAATCGCAG 852 Query 943 TCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTA 1002 ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 853 TCGCAAACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTA 912 Query 1003 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCA 1061 |||||||||||||||||||||||||||||||||||||| || ||| || || || ||||| Sbjct 913 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGATCA 971 Query 1062 CATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1121 ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 972 TATGAAAGTCGATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1031 Query 1122 TCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACA 1181 ||||||||||||||||||||||||||| ||||||||||| || | ||| || | |||||| Sbjct 1032 TCACACAAGAAGGCCAGCAGCAACATCGGTGGCGGCACAGAGCAACGGAAACCCGCAACA 1091 Query 1182 ACCACAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGTCACAAGATTTTCCACCACC 1241 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1092 ACCGCAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGCCACAAGATTTTCCACCACC 1151 Query 1242 GTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1301 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 GTCCGATGTAGCCAACAACGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1211 Query 1302 ACGTTCGTTGGAGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATAC 1361 ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1212 ACGTTCGGTGGAGAGAAGTTGTAACTCGCCGGCAGCATCTTCCTCTACAAATACAAATAC 1271 Query 1362 TTCTACTCCTGTGTCATAATCT 1383 |||||||||||| ||||||||| Sbjct 1272 TTCTACTCCTGTATCATAATCT 1293 Score = 178 bits (96), Expect = 1e-43 Identities = 129/144 (90%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 1440 TTATGTGAATGTAAGAAATATTTTCGTCCGTTTTTGTTTGTAACCAAGAAATGTTATTTC 1499 |||||||| ||||| ||| | |||||||| ||||||||||||| ||||||||||||||| Sbjct 1293 TTATGTGAGTGTAAAAAAAAAATTCGTCCG-TTTTGTTTGTAACAAAGAAATGTTATTTC 1351 Query 1500 CTCGGTTGGAAATTTTGAATAAAGTAGACGAATGCTACTATGTAGTATATACACGAGA-- 1557 || |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1352 CTAGGTTGGAAATTTTGAATAAAGTAGACGAATGC-A--ATGTAGTATATACACGAGAGA 1408 Query 1558 TAAGTGAAGACTCTTTGTTTTTCT 1581 ||||| |||| ||||||||||||| Sbjct 1409 TAAGTAAAGAATCTTTGTTTTTCT 1432 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 76 TTTAGGTACGCGACGGCCCGACCTCGAT 103 |||||||||||||||||||||||||||| Sbjct 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28 > Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 Length=1023 Score = 193 bits (104), Expect = 4e-48 Identities = 166/196 (85%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 946 CATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAAC 1005 ||| || |||| || ||||| || ||||||||| |||| |||||||| ||||| | || Sbjct 613 CATTCGAATAGGAAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCAC 672 Query 1006 GCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCACAT 1064 |||||||| || ||||| ||||| |||||||||||||| ||| || || || |||| ||| Sbjct 673 GCGCTTCAACAACTTGGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGATCTCAT 731 Query 1065 GAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-C 1123 |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| || | Sbjct 732 GAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGC 790 Query 1124 ACACAAGAAGGCCAGC 1139 |||||||||| ||||| Sbjct 791 ACACAAGAAGACCAGC 806 > Ahg920209 jgi|Araly1|920209|scaffold_101490.1 Length=1081 Score = 161 bits (87), Expect = 1e-38 Identities = 153/185 (83%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 955 AGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTCAG 1014 ||||| ||||| |||| ||||| || | || || | || ||| | ||||| ||||| Sbjct 564 AGAAAGCAAAGAAGGTGTTGGTCATCGCAGTTGCATAGACGCTTCTTGAACGCTCTTCAA 623 Query 1015 CAGCTT-GGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGA-TCACATGAAGGTTG 1072 || ||| || ||| ||||||| ||||| ||||||||||||||||| | | ||||| |||| Sbjct 624 CA-CTTAGGTGGACCTCATGTAGCTACGCCAAAGCAAATCAGGGAGTTA-ATGAAAGTTG 681 Query 1073 ATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGAA 1132 |||||||||| || || |||||||||||||||||||||||||||||||| || ||||||| Sbjct 682 ATGGATTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAA 741 Query 1133 GGCCA 1137 ||||| Sbjct 742 GGCCA 746 > Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 Length=477 Score = 106 bits (57), Expect = 6e-22 Identities = 98/116 (84%), Gaps = 10/116 (9%) Strand=Plus/Plus Query 1032 TGTTGCTACACC-AAAGCAAATCAGGGATCACATGAAGGT-----T-GATGGATTAACAA 1084 |||||||||||| ||| || || || |||| ||||||||| | ||||| ||||| | Sbjct 132 TGTTGCTACACCTAAA-CAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTA 190 Query 1085 ACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-CACACAAGAAGGCCAGC 1139 | ||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 191 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGCACACAAGAAGACCAGC 245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59306511465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5