BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68790.1
Length=3643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476006 jgi|Araly1|476006|fgenesh2_kg.2__1136__AT1G68790.1 5132 0.0
> Ahg476006 jgi|Araly1|476006|fgenesh2_kg.2__1136__AT1G68790.1
Length=3569
Score = 5132 bits (2779), Expect = 0.0
Identities = 3271/3504 (93%), Gaps = 52/3504 (1%)
Strand=Plus/Plus
Query 152 TTCGAACGGAAATGTTCACTCCGCAAAGGAATCGTTGGCCGGAGACAGACCGGAAGGGAA 211
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 105 TTCGAACGGAAATGTTCACTCCGCAGAGGAATCGGTGGCCGGAGACTGACCGGAAAGGAA 164
Query 212 AGGCCATAGCTTTTTCCGACGAAATCATTACACCTCCTCCACAAAGGGTGCTTCTCCGAG 271
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 165 AGGCCATAGCTTTTTCCGACGAAATCATGACACCTCCTCCACAAACAGTGCTTCTCCGAG 224
Query 272 AGGATGATGATTGGCAGAAGTTCAAAGAGGTTGGCTTGCTTGATGAAGCTTCTCTAGAAA 331
|||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 225 AGGACGATGATTGGCGGAAGTTCAAAGAGGTTGGTTTGCTCGATGAAGCTTCTCTAGAGA 284
Query 332 GAAAAGATCGTGATGCTCTTATAGAGAAAATCTTGAAGCTTGAAAAAGAGTTGTTTGATT 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAAAAGATCGTGATGCTCTTATAGAGAAAATCTTGAAGCTTGAAAAAGAGTTGTTTGATT 344
Query 392 ACCAACATAATATGGGGCTATTGCTTATTGAGAAGAAGCAGTGGACTTCAACAAAT-AAC 450
|||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||| ||
Sbjct 345 ACCAACATAACATGGGGCTTTTGCTAATTGAGAAGAAGAAGTGGACTTCAACAAATGTAC 404
Query 451 GAACTTCAACAAGCTTATGATGAAGCTATGGAGATGCTTAAACGTGAGAAGACGTCAAAT 510
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct 405 -AACTTCAACAAGCTTATGATGAAGCTACAGAGATTCTTAAACGTGAAAAGACGTCGAAT 463
Query 511 GCAATTACTTTAAATGAAGCTGACAAAAGAGAAGAGAATCTTAGAAAAGCTTTGATTGAT 570
| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 464 GTAATTGCTTTAAATGAAGCTGAAAAAAGAGAAGAGAATCTTAGAAAAGCTTTGATCGCT 523
Query 571 GAGAAGCAATTTGTTGCTGAGCTTGAGAATGATTTGAAGTATTGGCAACGAGAACACTCT 630
|||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 524 GAGAAGCAATTTGTGGCTGAGCTTGAGAAGGATTTGAAGTATTGGCAACAAGAACATTCT 583
Query 631 GTGGTGAAGTCTACTTCTGAGGCAAAGTTAGAGGAAGCAAATGCTTTGGTAATTGGTATG 690
|||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||||
Sbjct 584 GTGGTGAAGTCTACTTCTGAGGAAAAGTTAGCGGAAGCTAATGCTTTGGTTATTGGTATG 643
Query 691 AAGGAAAAAGCTTTAGAGGTGGATAGAGAAAGGGCCATTGCTGAAGAAAAGTTTTCAGTG 750
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 644 AAGGAAAAAGCTTTAGAGGTGGATAGAGAGAGAGCTATTGCTGAAGAAAAGTTTTCAGTG 703
Query 751 ATGAATAGAAAGAGTTCTGAGTTAGAACGCAAACTAAAGGAAGTGGAGACCCGTGAAAAG 810
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 704 ATTAATAGAAAGAGTTCTGAGTTAGAACGGAAACTAAAGGAGGTGGAGACTCGTGAAAAG 763
Query 811 GTGCACCAAAGGGAGCATCTTTCTCTAGTTACAGAACGAGAAGCACATGAGGCAGTGTTC 870
|||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 764 GTGCTTCAAAGGGACCATCTTTCGCTAGTAACAGAACGAGAAGCACATGAGGCAGTGTTT 823
Query 871 TACAAGCAGAGAGAAGACCTACAGGAATGGGAGAAGAAGTTAACACTGGAAGAAGATAGG 930
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 824 TACAAGCAGAGAGAAGACCTACAGGAATGGGAGAAGAAGCTAACACTAGAAGAAGATAGG 883
Query 931 TTGTCTGAAGTTAAAAGAAGCATTAACCATagagaagaaagagttatggaaaatgaaaga 990
|||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||
Sbjct 884 TTGTCTGAAGTTAAAAGAAGTATTAACCATAGAGAAGAAATAATTATGGAAAAGGAAAGA 943
Query 991 accatcgagaagaaagagaagatccttgaaaaTTTACAGCAAAAGATTTCTGTTGCCAAG 1050
|||||| ||||||||||||||||||||||||| || ||||||||||||| | |||| |||
Sbjct 944 ACCATCAAGAAGAAAGAGAAGATCCTTGAAAACTTGCAGCAAAAGATTTATATTGCTAAG 1003
Query 1051 TCCGAATTAACAGAGAAAGAAGAATCTATAAAGATTAAGCTAAATGACATTTCTTTGAAG 1110
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TCAGAATTGACAGAGAAAGAGGAATCTATAAAGATTAAGCTAAATGACATTTCTTTGAAG 1063
Query 1111 GAAAAAGACTTTGAGGCCATGAAGGCTAAAGTTGATATCAAAGAGAAGGAGCTCCATGAG 1170
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GAAAAAGACTTCGAGGCCATGAAGGCTAAAGTTGATATCAAAGAGAAGGAGCTCCATGAG 1123
Query 1171 TTTGAGGAGAATCTTATTGAGAGGGAGCAGATGGAGATTGGGAAGCTTCTTGATGATCAG 1230
||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1124 TTTGAGGAGAAGCTTATTGAAAGGGAGCAGATGGAAATTGGGAAGCTCCTTGATGATCAG 1183
Query 1231 AAGGCTGTTCTAGATTCAAGAAGGCGA-GAGTTTGAAATGGAGCTTGAACAGATGAGGAG 1289
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1184 AAGGCTGTTCTAGATTCAAGAAGGC-AGGAGTTTGAAATGGAGCTTGAACAGATGAGGAG 1242
Query 1290 ATCCCTTGATGAAGAACTCGAGGGAAAGAAAGCTGAAATCGAGCAGCTGCAAGTTGAGAT 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1243 ATCCCTTGATGAAGAACTCGAGGGAAAGAAAGCTGAAATCGAGCAGCTGCAAATTGAGAT 1302
Query 1350 CAGCCACAaagaagagaagttggctaagagagaggcagctttagagaaaaa-ggaggagg 1408
|||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1303 CAGCGAAAAAGAAGAGAAGTTGGCTAAGAGAGAGGCAGCTTTAGA-AAAAATGGAGGAGG 1361
Query 1409 gagtgaagaagaaagagaaggaTCTTGATGCAAGGCTCaaaaccgtgaaggagaaagaaa 1468
|||||||| ||||||||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct 1362 GAGTGAAGGAGAAAGAGAAGGATCTTGAAGCAAGTCTCAAAACTGTGAAGGAAAAAGAAA 1421
Query 1469 aagctctgaaagctgaagagaaaaagctgcatatggaaaaCGAGAGATTGCTCGAAGATA 1528
|| |||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 1422 AATCTCTAAAAGCTGAAGAGAAAAAGCTGCATATAGAAAATGAGAGATTGCACGAAGATA 1481
Query 1529 AGGAATGTCTGCGTAAACTAAAAGATGAGATTGAAGAGATCGGGACTGAGACAACAAAGC 1588
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1482 AGGAATGTCTGCGTAAACTAAAAGATGAGATTGAAGAGATTGGGGCTGAGACAACAAAGC 1541
Query 1589 AGGAATCAAGGATTCGTGAAGAACATGAAAGTCTTAGGATTACAAAAGAAGAGAGAGTCG 1648
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1542 AGGAATCAAGGATTCGCGAAGAACATGAAAGTCTCAGGGTTACAAAAGAAGAGAGAGTCG 1601
Query 1649 AGTTTCTGAGGCTGCAGTCTGAACTGAAGCAGCAGATAGATAAAGTTAAGCAAGAGGAGG 1708
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 AGTTTCTGAGGCTGCAATCTGAACTGAAGCAGCAGATAGATAAAGTTAAGCAAGAGGAGG 1661
Query 1709 AGCTGCTCTTGAAGGAACGTGAAGAACTGAAACAAGATAAGGAAAGATTTGAGAAAGAGT 1768
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGGTTCTCTTGAAAGAACGTGAAGAACTGAAACAAGATAAGGAAAGATTTGAGAAAGAGT 1721
Query 1769 GGGAAGCTTTGGATAAGAAGAGGGCTAACATAACTAGAGAGCAAAATGAAGTTGCTGAAG 1828
|||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1722 GGGAAGCTTTGGATCAGAAGAGGGCTGACATAACTAAAGAGCAAAACGAAGTTGCTGAAG 1781
Query 1829 AAAACGAGAAACTGAGAAATTTGCAAATATCTGAAAAGCATAGGCTGAAGAGAGAAGAGA 1888
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1782 AAAAGGAGAAACTGAGAAATTTGCAAATATCAGAAAAGCATAGGCTGAAGAGAGAAGAGA 1841
Query 1889 TGACCTCAAGGGATAATTTGAAGAGGGAATTGGATGGTGTCAAGATGCAGAAAGAATCAT 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 TGACCTCAAGGGATAATTTGAAGAGGGAATTGGATGGTGTCAAGATGCAGAAAGAATCAT 1901
Query 1949 TTGAAGCCGACATGGAAGATCTTGAGATGCAAAAAAGGAATCTTGACATGGAATTTCAGA 2008
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1902 TTGAAGCCGACATGGAAGATCTTGAGAAGCAAAAAAGGAATCTTGACATGGAGTTTCAGA 1961
Query 2009 GGCAAGAAGAAGCGGGTGAAAGAGATTTTAATGAAAGGGCGAGAACATATGAGAAGAGAA 2068
|||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1962 GGCAAGAAGAAGAGGGTGAGAGAGATTTTAATGAAAGGGCGAGAACATATAAGAAGAGAA 2021
Query 2069 GCCAAGAAGAGCTTGACAACATTAATTACACAAAGAAGCTGGCTCAAAGAGAGATGGAAG 2128
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2022 GCCAAGAAGAGCTTGACAACATCAATTACACAAAGAAGCTGGCTCAAAGAGAGATGGAAG 2081
Query 2129 AAATGCAATACGAGAAGCTTGCTCTGGAGAGGGAAAGAGAACAAATTTCGGTCCGAAAGA 2188
|| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 2082 AAGTGCAATACGAGAAGCTTGCTCTTGAGAGGGAAAGAGAACAAATTTCTGTCCAAAAGA 2141
Query 2189 AGTTGTTGAAAGAACAAGAAGCTGAGATGCATAAGGACATCACTGAGCTAGATGTACTCA 2248
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2142 AGTTGTTGAAAGAACAAGAAGCTGAGATGCATAAGGACATCACTGAGCTAGATATACTTA 2201
Query 2249 GAAGCTCTTTGAAGGAGAAACGA-AAAGAATTTATCTGTGAAAGGGAGCGTTTCCTAGTA 2307
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 2202 GAAGCTCTTTGAAGGAGCAACGAGAAA-AATTTATCTGTGAAAGGGAGCGTTTCTTAGTA 2260
Query 2308 TTTCTGGAAAAACTTAAGAGCTGCAGTTCCTGTGGAGAAATAACCGAAAATTTTGTTCTG 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 TTTCTGGAAAAACTTAAGAGCTGCAGTTCCTGTGGAGAAATAACCGAAAATTTTGTTCTG 2320
Query 2368 TCTGATCTTCGACTACCTGATGTTGAAGATGGGGACAAACGTTTCGGGAAACAAAAATTA 2427
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2321 TCTGATCTTCGACTACCTGATGTTGAGGATGGGGACAAACGTTTCGGGAAACAAAAATTA 2380
Query 2428 AAAGCAGAGGAGGCTTTGAACATTTCTCCCAGTGCAGAGAATAGCAAGAGAACATCTTTG 2487
| || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2381 ATAGTAGAGGAAGCTTTGAACATTTCTCCCAGTGCAGAGAATAGCAGGAGAACATCTTTG 2440
Query 2488 CTTGGGAAAATCGCTTCAAAGCTACTGAGCATATCACCAATTGGGAAGACAGATAAAGTC 2547
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 2441 CTTGGGAAAATCGCTTCAAAGCTATTGAGCATATCACCAATTGGGAA-A--GATAAAGTC 2497
Query 2548 ACTGATCTGGGTATAACAGTTAAGCTTCCAGAATCTTCGCAACCTGATGATTCTCTGGAT 2607
||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2498 ACTGATCTGGGTATAACGGCTAAGCTTCCAGAATCTTCGCAACCTGATGATACTCTGGAT 2557
Query 2608 AGAGTGTCAGGCGAGGATCATGAACCGTCTGCTACTGAACAGAGTTTCACAGATAGTAGA 2667
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 ATAGTGTCAGGCGATGATCATGAACCGTCTGCTACTGAACAGAGTTTCACAGATAGTAGA 2617
Query 2668 ATACAAGAAGGTCCTGAAGGTTCCCTCCAATCAGAGATGAAGAGTGATAAACCTAGACGA 2727
|||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 2618 ATACAAGATGGTCCTGAAGGTTCCCTGCAATCAGAAATAAAGAGTGATAAACCTAGACGA 2677
Query 2728 GGTAGAGGTAGAGGTAGAGGTAG-GG--G---TAAGTCTGTTAGAGGAAGATCGCAAGCA 2781
||||||||||||||||||||||| || | |||||||| |||||||||||||||||||
Sbjct 2678 GGTAGAGGTAGAGGTAGAGGTAGAGGTAGGGGTAAGTCTGCTAGAGGAAGATCGCAAGCA 2737
Query 2782 ACAAAAGCTGTGTCCAGAGATTCAAAACCATCTGATGGGGAAACTCCAAGGAAGCGGCAA 2841
|||||||||| || ||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 2738 ACAAAAGCTGCCTCTAGAGATTCAAAACCATCTGATGGTGAAATTCCAAGGAAGCGACAA 2797
Query 2842 CGCGAACAGACTTCTAGAATCACAGAAAGTGAACAGGCAGCTGGTGATAGTGATGAGGGT 2901
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2798 CGTGAACAGACTTCTAGAATCACAGAAAGTGAACAGGTAGCTGGTGATAGTGATGATGGT 2857
Query 2902 GTAGACAGTATTACAACTGGTGGACGTAGGaaaaaaaGACAGATAGCTGTTCCAGTCTCT 2961
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2858 GTAGACAGTACCACAACTGGTGGACGTAGGAAAAAAAGACAGATAGCTGTTCCAGTCTCT 2917
Query 2962 CAAACGCCTGGACAAACCCGATATCAGCTCAGGAGACATAGAAATGTAGGAACAGAAGAA 3021
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2918 CAAACGCCTGGACAAAGCCGATATCAACTCAGGAGACATAGAAATGTAGGAACAGAAGAA 2977
Query 3022 GATAAAGCACAAGCATCAAAGGGTGCCACTGAAAAACAAGA-ACGTGTCAATGATGATAT 3080
| ||||||||||||||||| |||||||||| |||||||||| | ||||||||| ||||||
Sbjct 2978 GTTAAAGCACAAGCATCAATGGGTGCCACTAAAAAACAAGAGA-GTGTCAATGGTGATAT 3036
Query 3081 CAGAAAAGTGCCAAGTCCGAAGGAAACTCGTACTCCACCGGAAGGTGAGAATAGAGAAAA 3140
|||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 3037 TAGAACAGTGCCAAGTCCGAAGGAAGCTCTTACTCCACCGCAAGGTGAGAATAGAGAAAA 3096
Query 3141 TGGCAAAGCTGAAGTATTAGTGGAGACGGTAACACATGAGGAGATTGTTACGGTTGAAAC 3200
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 3097 TGGCAAAGCTGAAGTATTCGTGGAGACGGTAACACATGAGGAGATTGTTAGGGTTGAAGT 3156
Query 3201 AGAAACTGTGTTCAAGGTTAACAACACAGGAAAGAACCCAGTCGAAGATCCGCAGTTGGA 3260
||| |||| |||||||| ||||||||| ||||| | | ||||||||||| |||||||||
Sbjct 3157 AGAGACTGAGTTCAAGGATAACAACACGGGAAATAGGCTAGTCGAAGATCAGCAGTTGGA 3216
Query 3261 AGTAGGAGGCAGTGGTGAAATAAGAGAGCATGGtgaagaagatgatgagaatatcagcat 3320
|| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 3217 AGCAGGAGGCAGCGGTGAAATAAGAGAGCATGGTGAAGATGATGATGAGAATTTCAGCAT 3276
Query 3321 gatcgaagaggagaacgaaggagaagaagaagaagaaACAGAGCGCCAAGGAAATGATGC 3380
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 3277 GATCGAAGAGGAGAACGAAGGAGAGGAAGAAGAAGAAACCGAGCGCCAAGG---TGATGC 3333
Query 3381 TTCCATAGGAAAAAAGATTTGGGTCTTTTTCACAACATGATCATTTTCTTCATTTCTCTC 3440
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 3334 TTCCATAGGAAAAAAGATTTGGGTCTTTTTCACAACTTGATCATTTTCTTTATTTCTCTT 3393
Query 3441 TAAA-AGACAAAATTATCATCCCATAAGTAGGATTTTGCAACATCTTGTTATGTGTTGGT 3499
|||| | |||||| | |||||| | |||||||||||||||||||||||||||||||||
Sbjct 3394 TAAATA-ACAAAAAC-T-ATCCCACATGTAGGATTTTGCAACATCTTGTTATGTGTTGGT 3450
Query 3500 TCGTTTTTTAACTATCACCTTTCTTTATCTAAGCAACT-GAAAAACAAAAAGGAAGTGGA 3558
|| |||||||||| || ||||||| ||||||||||| |||| ||||||||
Sbjct 3451 TC-TTTTTTAACT-TCTT-TTTCTTTTTCTAAGCAACTTGAAA--CAAAAAGG------- 3498
Query 3559 ATCTTGGGAAGGCATGGGCATTGTAGAAAATGTAACATTTGATTTTTACTCTGCTACTCC 3618
| | |||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 3499 --C-----A-----TGGGCATTGTAGGAAATGTAACATTTGATTCTTACTCTGCCACTCC 3546
Query 3619 ATAAGGTAATGCTGGTATTCAAGG 3642
||| | ||||||||||||||||||
Sbjct 3547 ATA-GATAATGCTGGTATTCAAGG 3569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137616183968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5