BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68830.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315903 jgi|Araly1|315903|fgenesh1_pm.C_scaffold_2000936 2820 0.0
> Ahg315903 jgi|Araly1|315903|fgenesh1_pm.C_scaffold_2000936
Length=1689
Score = 2820 bits (1527), Expect = 0.0
Identities = 1636/1690 (97%), Gaps = 2/1690 (0%)
Strand=Plus/Plus
Query 78 ATGGCTACAATATCTCCGGGAGGAGCTTACATCGGAACTCCCTCACCGTTTCTCGGCAAA 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACAATATCTCCGGGAGGAGCTTACATCGGAACTCCCTCACCGTTTCTCGGCAAA 60
Query 138 AAACTCAAACCTTTCTCTCTAACTTCACCGATTTTGAGTTTTAAACCAACGGTTAAGCTC 197
|||||||||| ||||||| |||||||||| |||| || || |||||||||||||||||||
Sbjct 61 AAACTCAAACATTTCTCTTTAACTTCACCAATTTCGACTTCTAAACCAACGGTTAAGCTC 120
Query 198 AATTCCAG-TTGTCGCGCTCAATTGATCGATACGGTTCACAATCTCTTCATCGGAGTTGG 256
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTCC-GATTGTCGCGCTCAATTGATCGATACGGTTCACAATCTCTTCATCGGAGTTGG 179
Query 257 AGTTGGACTTCCATGTACGGTTATGGAGTGTGGTGATATGATATATCGAAGTACTTTGCC 316
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 AGTCGGACTTCCATGTACGGTTATGGAGTGTGGTGATATGATCTATCGCAGTACTTTGCC 239
Query 317 GAAATCTAATGGTTTAACGATCACTGCTCCTGGAGTAGCTTTAGCTCTCACTGCTCTTTC 376
|||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 240 GAAATCGAATGGTTTAACGATTACTGCTCCTGGAGTGGCGTTAGCTCTCACTGCTCTCTC 299
Query 377 GTATCTATGGGCAACACCTGGTGTTGCTCCTGGGTTTTTCGATATGTTTGTTCTTGCTTT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTATCTATGGGCAACACCTGGTGTTGCTCCTGGGTTTTTCGATATGTTTGTTCTTGCTTT 359
Query 437 TGTTGAGAGATTGTTTCGACCTACTTTTAGAAAGGATGATTTTGTTGTTGGGAAGAAATT 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTTGAGAGATTGTTTCGACCTACTTTTAGAAAGGATGATTTTGTTGTTGGGAAGAAATT 419
Query 497 AGGGGAAGGTTCTTTTGGTGTTGTTTATAAAGTCTCATTATCTAAGAAACGTTCTAATGA 556
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 420 AGGGGAAGGTTCTTTTGGTGTTGTTTATAAAGTCTCATTATCCAAAAAACGTTTTAATGA 479
Query 557 GGAGGGTGAGTATGTATTGAAGAAGGCGACTGAGTATGGTGCGGTGGAGATTTGGATGAA 616
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 480 GGAGGGTGAGTTTGTATTGAAGAAGGCGACTGAATATGGTGCGGTGGAAATTTGGATGAA 539
Query 617 CGAGAGGGTTCGAAGAGCTTGTGGGAATAGCTGTGCTGATTTTGTTTATGGATTTCTCGA 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAGAGGGTTCGAAGAGCTTGTGGGAATAGCTGTGCTGATTTTGTTTATGGATTTCTCGA 599
Query 677 TAAGTCTTCAAAGAAGGGACCTGAGTATTGGCTGTTATGGAAATATGAAGGAGAATCAAC 736
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAGTCTTCGAAGAAGGGACCTGAGTATTGGCTGTTATGGAAATATGAAGGAGAATCAAC 659
Query 737 ACTTGCTGGTTTGATGCAGAGTAAAGAATTTCCTTATAATGTAGAAACTATCATCCTTGG 796
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ACTTGCTGGTTTGATGCAGAGTAAAGAATTCCCTTATAATGTAGAAACTATCATCCTTGG 719
Query 797 GAAAGTTCAAGACTTGCCTAAAGGGTTGGAACGAGAAAACAAAATTATTCAGACTATCAT 856
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 GAAAGTACAAGATTTGCCTAAAGGGTTGGAAAGAGAAAACAAAATTATTCAGACTATCAT 779
Query 857 GAGACAACTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGGATTATCCATAGGGATGT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGACAACTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGGATTATCCATAGGGATGT 839
Query 917 TAAGCCTCAGAACATTATTTTCTCAGAAGGTTCTCGTTCTTTCAAGATTATCGATCTTGG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TAAGCCTCAGAACATTATTTTCTCAGAAGGTTCTCGTTCTTTCAAGATTATCGATCTTGG 899
Query 977 AGCTGCAGCTGATTTGAGAGTGGGAATTAACTACATTCCAAAAGAGTTTCTCCTTGATCC 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 AGCTGCAGCTGATTTGAGAGTGGGAATTAACTACATTCCAAAAGAGTTTCTCCTGGATCC 959
Query 1037 AAGGTATGCAGCACCTGAGCAATACATCATGAGCACCCAAACTCCATCTGCACCTTCAGC 1096
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 AAGGTATGCAGCACCTGAGCAATACATCATGAGCACACAAACTCCATCTGCACCTTCAGC 1019
Query 1097 ACCTGTTGCAGCTGCACTTTCCCCTGTCCTGTGGCAGATGAATTTGCCAGATAGGTTCGA 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACCTGTTGCAGCTGCACTTTCCCCTGTCCTGTGGCAGATGAATTTGCCAGATAGGTTCGA 1079
Query 1157 TATCTATAGCATTGGCCTCATCTTCCTTCAAATGGCATTCCCATCCTTACGATCTGACAG 1216
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 TATCTATAGCATTGGCCTCATCTTCCTTCAAATGGCATTCCCATCCTTACGAACTGACAG 1139
Query 1217 CAACCTCATTCAGTTCAACCGCCAGCTGAAAAGATGTGACTATGACTTAACAGCTTGGAG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 CAACCTCATTCAGTTCAACCGCCAGCTGAAAAGATGTGACTATGACTTAACTGCTTGGAG 1199
Query 1277 AAAACTAGTGGAGCCTCGTGCAAGCGCTGATCTCCGTAGAGGGTTCGAGCTTGTAGATCT 1336
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 AAAACTAGTGGAGCCGCGTGCAAGCGCTGATCTCCGTAGAGGGTTCGAGCTAGTAGATCT 1259
Query 1337 AGACGGTGGAATCGGATGGGAACTTCTAACATCGATGGTCCGGTACAAAGCAAGACAAAG 1396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 AGACGGTGGAATCGGATGGGAACTTCTTACATCGATGGTCCGGTACAAAGCAAGACAAAG 1319
Query 1397 AATCAGCGCAAAAGCAGCTCTTGCTCACCCATATTTCGATAGACAAGGATTGCTCGCGTT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1320 AATCAGCGCAAAAGCAGCTCTTGCTCACCCATATTTCGATAGACAAGGATTACTTGCGTT 1379
Query 1457 GTCCGTCATGCAAAACTTGAGAATGCAATACTTCAGGGCTACACAACAGGACTACAGTGA 1516
||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 GTCGGTCATGCAGAACTTGAGGATGCAGTACTTCAGGGCTACACAACAGGACTACAGTGA 1439
Query 1517 AGCAGCAAATTGGGTAATACAGTTAATGGCAAAAAATGGGACAGAAAAAGATGGTGGATT 1576
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AGCAGCAAATTGGGTGATTCAGTTAATGGCAAAAAATGGGACAGAAAAAGATGGTGGATT 1499
Query 1577 CACAGAAACACAACTCCAAGAACTCAGGGAGAAAGAGCCTCGAAAGAAAGCGAATGCGCA 1636
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1500 CACAGAAACGCAACTCCAAGAACTCAGGGAGAAAGAGCCTCGAAAGAAGGCGAATGCGCA 1559
Query 1637 AAGAAATGCTCTTGCATCAGCACTTAGGCTTCAGAGGAAGCTTGTGAAAACAGTCACTGA 1696
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1560 AAGAAACGCTCTTGCATCAGCACTTAGGCTTCAGAGGAAGCTTGTGAAAACAGTTACTGA 1619
Query 1697 GACCATAGATGAGATTAGCGATGGCCGCAAGACCGTTTGGTGGAACCGATGGATCCCCAG 1756
||| || |||||| ||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1620 GACTATTGATGAGTTTAGCGATGGCCGAAAGACCGTGTGGTGGAACAGATGGATCCCCAG 1679
Query 1757 AGAGGAGTGA 1766
||||||||||
Sbjct 1680 AGAGGAGTGA 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5