BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G68840.1 Length=1410 Score E Sequences producing significant alignments: (Bits) Value Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1 1868 0.0 > Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1 Length=1357 Score = 1868 bits (1011), Expect = 0.0 Identities = 1129/1185 (95%), Gaps = 11/1185 (1%) Strand=Plus/Plus Query 1 GTAACAACGTCACCTAAATCTCTCTCACCCAATTTGTGTTTCTTCTTTCTGCTAAAAGGT 60 |||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1 GTAACAACGTCACCAAAATCTCTCTCACCTAATTTGTGTTACTTCTTTCTGTTAAAAGGT 60 Query 61 TATAATTTTTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACTGAAACAAAGAAAATGGA 120 |||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 61 TATAATTTGTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACAGAAAC-AA-AAAATGGA 118 Query 121 TTCTAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCCGCCACCACCGC 180 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || | Sbjct 119 TTCCAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCAGCCACCGCCAC 178 Query 181 CAAGAAGCTC-T-CTCCTCCTCCCGCGGCGGCGTTACGCCTCTACCGGATGGGAAGCGGC 238 | | ||| | || ||| ||| || ||||||||||||||||||||||||||||| ||| Sbjct 179 CTTG--TCTCTTCCTTCTCATCCGGCTGCGGCGTTACGCCTCTACCGGATGGGAAGTGGC 236 Query 239 GGGAGCAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 298 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GGAAGTAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 296 Query 299 TCTTCAAAATACAAAGGTGTTGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 358 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 297 TCGTCAAAATACAAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 356 Query 359 GAGAAGCACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 418 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GAGAAACACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 416 Query 419 TACGACATCGCAGCTTGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 478 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TACGACATCGCCGCTCGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 476 Query 479 CTGGAAGACGGCGATTTAGCTTTTCTTGAAGCTCACTCAAAGGCCGAGATCGTCGACATG 538 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 477 CTGGAAGACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATG 536 Query 539 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAGAACAATAAACGGCAGTTGTTTCTC 598 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 537 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTC 596 Query 599 TCCGTCGACGCTAACGGAAAACGTAACGGATCGAGTACTACTCAAAACGACAAA-GTTTT 657 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 597 TCCGTCGACGTTAACGGAAAACGTAACGGATCGAGTACAACTCAAAACGA-AAACGTTTT 655 Query 658 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTTGGGAAGCTAAA 717 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 656 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTCGGGAAGCTAAA 715 Query 718 CCGTCTCGTGATACCTAAACAACACGCCGAGAAACACTTTCCGTTACCGTCACCGTCACC 777 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 716 CCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTCACCGTCACC 775 Query 778 GGCAGTGACTAAAGGAGTTTTGATCAACTTCGAAGACGTTAACGGTAAAGTGTGGAGGTT 837 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 776 GGCAGTGACTAAAGGCGTTTTGATCAACTTCGAAGACGTTAACGGCAAAGTGTGGAGGTT 835 Query 838 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 895 Query 898 CGTCAAGGAGAAGAATCTTCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 957 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 896 CGTCAAGGAGAAGAATCTCCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 955 Query 958 AGAGCGGCAG-TTATATATTGATTGGAAAGTTCGGTCTGGTCCGAGAGAAAACCCGGTTC 1016 ||| |||||| || ||||||||||||||||| || || |||||||| ||||||||||||| Sbjct 956 AGACCGGCAGCTT-TATATTGATTGGAAAGTCCGATCCGGTCCGAGGGAAAACCCGGTTC 1014 Query 1017 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACCACCGTGAAGCCAAACG 1076 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1015 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACTACCGTGAAGCCAAACG 1074 Query 1077 ACGTCGTGGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1136 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 ACGTCGTAGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1134 Query 1137 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACATAttt 1181 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1135 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACAT-TTT 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52716899080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5