BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69160.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476040 jgi|Araly1|476040|fgenesh2_kg.2__1170__AT1G69160.1 1816 0.0
> Ahg476040 jgi|Araly1|476040|fgenesh2_kg.2__1170__AT1G69160.1
Length=1257
Score = 1816 bits (983), Expect = 0.0
Identities = 1168/1254 (93%), Gaps = 25/1254 (2%)
Strand=Plus/Plus
Query 1 ATCATTCCCTAGCAACTTGTTCCTCATTCTCCGCAAATCAAGCATAGAAAGAG--ACTCT 58
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 ATCATTCCTTAGCAACTTGTTCCTCATTCCCCGCAAATCAAGCATAGAAAGAGATACTCT 60
Query 59 TGGAGATCATCCAAGTATCCGATTCTCAGACCCTAAAAATATAATGTCCATGAAAGGGAT 118
| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 61 T-G-GATCATCCAAGTATCCGATTCTCAAACCGTAAAAATATAATGTCCATGAAAGGGAT 118
Query 119 CTCATCAGCAGAGTCAGATAAGCTCTCTAGGAGAATATCTTTGACCCACAAGCGCAATTC 178
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 119 CTCATCAGCAGAGCCAGATAAGCTCTCGAGGAGAATATCTTTGACCAACAAGCGCAATTC 178
Query 179 CGAAGAGCTTGACGTGTTTGAAGCTGCCGTGTACTTCGGCTACAATGAAGCCTCCTCCGG 238
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 179 CGAAGAGCTTGACGTGTTTGAGGCCGCAGTGTACTTCGGCTACAATGAAGCCTCCTCTGG 238
Query 239 TGACCATGGACATACACAAAAGTATGGCTATAACGCAGCGAGAGAGGAGAATCCGAGGAG 298
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 239 TGACCATAGACCTACACAAAAGTATGGCTATAACGGAGCGAGAGAGGAGAATCCTAGGCG 298
Query 299 ATGGGGAATATT---AGGAGGTGGAAGAAGAATCAGCTTGGATTTGCCTATTAGATGCTC 355
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ATGGGGAATATTAGGAGGAGGAGGAAGAAGAATCAGCTTGGATTTGCCTATCAGATGCTC 358
Query 356 AGAACAAGTGTACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAACAAGTGCACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 418
Query 416 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGTTCACCAGGTGGGAAAATCGCCAG 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGCTCACCAGGTGGGAAAATCGCCAG 478
Query 476 CTTCTTGAACTCCTTGTTCCATCAAGCAGGTTCGAAGAAAAACAAATCAAAGTCAAAGTC 535
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 479 CTTCTTGAACTCCTTGTTCCATCAAGCAAGTTCGAAGAAGAACAAATCAAAGTCAAAGTC 538
Query 536 AAAGACAAAGCCAACAGATCCAGAAGTggaagaggagatccccggaggaggatggatgag 595
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 539 AAAGACAAAGCCAACGGATCCAAAAGTGGAAGAGGAGATCCCTGGAGGAGGATGGATGAG 598
Query 596 gaggaggaggagAAGCAGTATCAGCCATTTCTTTAGCTCAAGCAGATCTACTTCAACAAC 655
||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 599 GAGGAGGAGAAGAAGCAGTATCAGCCATTTCTTGAGCTCAAGCAGATCTAATTCAACCAC 658
Query 656 CACCACTACCACGGCGTCATCATCTTCAAAATCTCTGATTTCCTCATCAAGCTCGGGTTT 715
|||||| |||||||| |||||||| |||||||||||||| || || ||||||||||||||
Sbjct 659 CACCACCACCACGGCATCATCATCATCAAAATCTCTGATGTCGTCTTCAAGCTCGGGTTT 718
Query 716 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 778
Query 776 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAACTAAGACCAACAAAGAGTACTCTTG 835
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 779 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAAAGAAGACCAACAAAGAGTTCTCATG 838
Query 836 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGTCGGA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 839 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGGCTGA 898
Query 896 TGATGAAGATATCGATGATGATAGGAGAATAAAGAGAGAAGGAGAGGATGATGGAATGGA 955
|||||| |||||||||| ||||||||| |||||| ||||| ||||||||||||||
Sbjct 899 TGATGA------CGATGATGATCGGAGAATAAGGAGAGAGGGAGATGATGATGGAATGGA 952
Query 956 GAGTGATTCAAGTTCTGATCTCTTCGAGTTGCAAAATTACGAATTATCTCGTGGAGGCTT 1015
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 953 GAGTGATTCAAGTTCTGATCTCTTCGAGTTGCAAAACTACGAGTTGTCTCGTGGAGGCTT 1012
Query 1016 GCCAGTCTACGAGACTACCAATGTAGCTAACATCAACAAGACTCATATATAATTTAAACT 1075
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1013 ACCAGTCTACGAGACTACCAATGTAGCTAACATCAACAACACTCATATATAATCAAAACT 1072
Query 1076 ATCTTGAGTGTCATCAACTCCATCAGATCTTGGTAATGACACCCATAAAGCAAATTGTTT 1135
||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1073 CTCT-GAGTGTCAAAAACTCCATCAGATCTTGGTAATAACACCCATAAAACAAATTGTTT 1131
Query 1136 TCTTC-GATTTGTTCTTGTCTGATTGTTCATAAGTTATATGT--TT-TTG-GGTTT-CTT 1189
| ||| ||||||||||||||||||||||| | |||||||||| || || ||||| |||
Sbjct 1132 T-TTCAGATTTGTTCTTGTCTGATTGTTCTTCAGTTATATGTAATTCTTTTGGTTTTCTT 1190
Query 1190 GGATTTGTTTGTGGAAGCTTTAATGA-TAttttttttt--GTATGAGATTATTT 1240
|||||||||||||||||||||||||| | ||||||||| |||||||||| |||
Sbjct 1191 GGATTTGTTTGTGGAAGCTTTAATGAATTTTTTTTTTTCTGTATGAGATT-TTT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5