BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69260.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926219 jgi|Araly1|926219|scaffold_201780.1 1596 0.0
Ahg476053 jgi|Araly1|476053|fgenesh2_kg.2__1183__AT1G69270.1 58.4 1e-07
> Ahg926219 jgi|Araly1|926219|scaffold_201780.1
Length=1096
Score = 1596 bits (864), Expect = 0.0
Identities = 1019/1090 (93%), Gaps = 26/1090 (2%)
Strand=Plus/Plus
Query 254 TTCTTTTTTGTTAATGGCGGAAGCAAACGAGAGAAGTAAAGAAATGGCGAGAAGTAATAG 313
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 8 TTCTTTGTTGTTAATGGCGGAAGCAAACCAGAGAAGTAGAGAAATGGCGAGAAGTAATAG 67
Query 314 TTGTGTGTTTCCAAGAGATCTGCTTCAGAGATTTATCTCTAACTCTGTtgaaggtgaaga 373
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 68 TTGTGTGTTTCCAAGAGATCTACTTCAGAGATTTATCTCTAATTCTGTTGAAGGTGAAGA 127
Query 374 tgatgatgaagaagaagatgatgatgagatCGAGTTAAATCTTGGCTTATCTCTTGGTGG 433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TGATGATGAAGAAGAAGAAGATGATGAGATCGAGTTAAATCTTGGCTTATCTCTTGGTGG 187
Query 434 AAGATTTGGTGTTGATAAGAG------TAATAAGCTTGTGAGATCTTCTTCCGTTGTTGT 487
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 188 GAGATTTGGAGTTGATAAGAGTAATAATAATAAGCTTGTGAGATCTTCTTCCGTTGTTGT 247
Query 488 AACGATGCCTCTGTTTCGTGAAGATCATCATCATCATCAAGCGGCGGCGATGATAACAAC 547
|| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 248 CACCATGCCTCTGTTTCGGGAAGATCATCATCTTCATCAGGCGGCGGCGATGATAACGAC 307
Query 548 TAAGGTTTCGACGGAGACGGTGGCGGGAGCGACTCGGGGTACGGGTTTGATGAGAACGAC 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAAGGTTTCGACGGAGACGGTGGCGGGAGCGACTCGGGGTACGGGTTTGATGAGAACGAC 367
Query 608 GTCGTTGCCGGCAGAGTCGGAGGAAGAGTGGAGGAAGAGGAAAGAGATGCAGACTTTGAG 667
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTCGTTGCCGGCGGAGACGGAGGAAGAGTGGAGGAAGAGGAAAGAGATGCAGACTTTGAG 427
Query 668 AAGAATGGCAGCCAAGAGACGGAGAAGCGAGAAGCTTCGTACTG--GC-GTCGGCGG--- 721
||||||||| || ||||||||||||||||||||||||||||| | || |||| |||
Sbjct 428 AAGAATGGCGGCGAAGAGACGGAGAAGCGAGAAGCTTCGTACCGTCGCCGTCGCCGGTGG 487
Query 722 AGGAAACAGTAATAATCCGGAAGAAGCTG-CTACTGCCACCGCTTCGAGACGGCGAGGTA 780
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 488 AGGAAACAGTAATAATCCGGAAGAAGCTGTC-ACTGCCACCACTTCGAGACGGCGAGGTA 546
Query 781 GACCATCGTCAGGACTTCCACGGTGGTCAGCGACTGCTAACAAAAGCGGGCTTTTGCGGC 840
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 547 GACCATCGTCAGGGCTTCCTCGGTGGTCAGCGACGGCTAACAAAAGCGGGCTTTTGCGGC 606
Query 841 AGCACAGTGCTGGTCTCGATTCACTACAAGTTTCCGGTGAATCTCTAGGCGGAGGA--AG 898
| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 607 AACACAGTGCTGCTCTTGATTCACTACAAGTTTCCGTTGAATCTCAAGGCGGAGGAGGAG 666
Query 899 ----AG---CCGCCGGAAGTTCTTCGAGCGTCTCCGAGTTGGAAACTAAAGCGTCCAGTG 951
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 667 GTGGAGGAGCCGCCGGAAGTTCATCGAGCGTCTCCGAGTTGGAAACTAAAGCGTCGAGCG 726
Query 952 ACGAAGCAAGAAGCTTACCATCAACTACACAGCCACAACAAGAAACAACGACAAAGCCAA 1011
| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 727 ATGAAGCAAGAAGCTTACCATCAACGACACA---ACAACAGGAAACAACGACAAAGCCAA 783
Query 1012 CAAATCGTTTGAGAAGATTGAGTTCAGTGGACATGAACATGAAGATGGAGCCACAAGGGA 1071
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CAAATCGGCTGCGAAGATTGAGTTCAGTGGACATGAACATGAAGATGGAGCCACAAGGGA 843
Query 1072 AAGGAAAAAGTGAGATGCCATGTGTGTTTACCAAAGGAGATGGACCAAATGGGAAGAGAG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AAGGAAAAAGTGAGATGCCATGTGTGTTTACCAAAGGAGATGGACCAAATGGGAAGAGAG 903
Query 1132 TTGATGGGATTCTTTATAGATACGGCAGTGGAGAAGAAGTTAGGATCATGTGTGTTTGCC 1191
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 904 TTGATGGGATTCTTTATAGATACAGTAATGGAGAAGAAGTTAGGATCATGTGTGTTTGCC 963
Query 1192 ATGGCGATTTCTTGTCTCCGGCGGATTTCGTTAAACATGCCGGTGGTCCTCATGTAGATC 1251
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 964 ATGGCGATTTCTTGTCTCCGGCCGATTTCGTTATACATGCCGGTGGTCCTCATGTAGATC 1023
Query 1252 ATCCTCTTAGACACATTGTTGTCAACACTTCTTCTCCTTCTAATCTCTTATAATAGACCA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ATCCTCTTAGACACATTGTTGTCAACACTTCTTCTCCTTCTAATCTCTTATAATAGACCA 1083
Query 1312 AAAACCCTCT 1321
||| ||||||
Sbjct 1084 AAACCCCTCT 1093
> Ahg476053 jgi|Araly1|476053|fgenesh2_kg.2__1183__AT1G69270.1
Length=1963
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1423 AAGGAGAAAGAAACATCATTTATATCAGTTT 1453
|||||||||||||||||||||||||||||||
Sbjct 1963 AAGGAGAAAGAAACATCATTTATATCAGTTT 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5