BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69390.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476066 jgi|Araly1|476066|fgenesh2_kg.2__1196__AT1G69390.1 1447 0.0
> Ahg476066 jgi|Araly1|476066|fgenesh2_kg.2__1196__AT1G69390.1
Length=899
Score = 1447 bits (783), Expect = 0.0
Identities = 861/899 (96%), Gaps = 3/899 (0%)
Strand=Plus/Plus
Query 3 GAAGAGTCGTCGTAATCTCATTTCTC-TTTTAACTGAGACGAAAAAGATTCACTTCTCCG 61
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 1 GAAGAGTCGTCGTAATCTCATCTCTCTTTTTAACTGAGACGAAAAAGATTCGCTTCTCCG 60
Query 62 GCGAGCAATTTCAAGTTTCTCGGTAATGGCGATGTCTTCTGGAACTCTCAGGATCTCTGC 121
|||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGAACAAATTCAACTTTCTCGTTAATGGCGATGTCTTCTGGAACTCTCAGGATCTCTGC 120
Query 122 GACCTTAGTATCTCCTTATCATCATCACCACCGTAATCGCCTCTCATTACCTTCTTCTTC 181
|||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||
Sbjct 121 GACCTTAGTATCTCCTTATCATAACCACCACCCTAATCGCCTCTCACTACCTTCTTCTTC 180
Query 182 TTCCAAGGTTGATTTCACGGGATTCATAAGCAATGGCGTAAACAGTTTGGAAACTCAGAA 241
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 TTCCAAGGTTGATTTCACGGGATTCATAAGCAATGGCGCAAACAATTTGGAAACTCAGAA 240
Query 242 ATGTACTCCTGGACTGGCGATCAGCCGCGAAAACACACGAGGTCAGGTGAAGGTTCTTGC 301
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||
Sbjct 241 ATGTACTCCTGGACTGGCGATCAGCCGCGAAAACACATGTGGTCATGTGAAGGTTTTTGC 300
Query 302 AAGGAACACCGGAGACTATGAACTATCACCAAGCCCAGCAGAGCAAGAGATAGAGAGCTT 361
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 AAGGAACACTGGAGACTATGAACTATCACCAAGCCCAGCTGAGCAAGAGATAGAGAGCTT 360
Query 362 TCTCTATAATGCCATCAACATGGGTTTCTTTGACAGGTTAAACTTGGCTTGGAAGATAAT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCTATAATGCCATCAACATGGGTTTCTTTGACAGGTTAAACTTGGCTTGGAAGATAAT 420
Query 422 ATTCCCATCTCACGCATCAAGAAGAAGCTCCAACGCAAGAATTGCAAAGCAGCGGCTCAA 481
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ATTCCCATCACACGCATCAAGAAGAAGCTCCAACGCAAGAATCGCAAAGCAGCGGCTCAA 480
Query 482 GATGATCCTCTTCTCCGACAGGTGTGATGTTAGTGACGAAGCTAAAAGGAAAATCGTCAA 541
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGATCCTATTCTCGGACAGGTGTGATGTTAGTGACGAAGCTAAAAGGAAAATCGTCAA 540
Query 542 CAACATTATCCATGCACTGTCGGATTTCGTAGAGATAGAATCAGAGGAAAAAGTTCAGCT 601
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 CAACATTATACACGCACTGTCGGATTTCGTAGAGATAGAATCAGAGGAAAAGGTTCAGCT 600
Query 602 AAATGTTTCCACGGACGGTGACCTTGGGACCATTTACTCGGTCACGGTGCCTGTTAGAAG 661
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 AAACGTTTCCACGGACAGTGACCTTGGGACCATTTACTCGGTCACGGTGCCTGTTAGGAG 660
Query 662 GGTGAAACCAGAGTACCAAGACGTGGACGAGGCTGGAACCATAACCAACGTGGAATACAA 721
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GGTGAAACCAGAGTACCAAGACGTGGACGAGGCTGGAACCATAACCAATGTGGAATACAA 720
Query 722 AGATACCCGTGATGGTTCTGTCGATGTCAGGTTCGATTTTTATGTTCCAGAGTGATGAAA 781
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 721 AGATACTCGTGATGGTTCTGTCGATGTCAGGTTCGATTTTTATGTTCCAGAGTAATGAGA 780
Query 782 AGGCACAGTCTTAGATTTATTTGCTGGATAGTATCTTGTCTGTTA--TGTTGATGTTCTT 839
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 781 AGGCTCAGTCTTAGATTTATTTCCTGGATAGTATCTTGTCTGTTTGGTGTTGATGTTCTT 840
Query 840 CAAGTTTAGTCTGGAGGGAACAAAGACAGTTTCTTGACACTCCCCATGtatatatatat 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGTTTAGTCTGGAGGGAACAAAGACAGTTTCTTGACACTCCCCATGTATATATATAT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5