BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69420.2 Length=2064 Score E Sequences producing significant alignments: (Bits) Value Ahg476070 jgi|Araly1|476070|fgenesh2_kg.2__1200__AT1G69420.1 2996 0.0 > Ahg476070 jgi|Araly1|476070|fgenesh2_kg.2__1200__AT1G69420.1 Length=2335 Score = 2996 bits (1622), Expect = 0.0 Identities = 1752/1816 (96%), Gaps = 4/1816 (0%) Strand=Plus/Plus Query 82 AGCATTTCTTCTT-GAGGAAAAATGAGGAAACATGGATGGCAGCTTCCATACCATCCTCT 140 |||| |||||||| ||||| | |||||||||||||||||||| ||||| ||||||||||| Sbjct 316 AGCA-TTCTTCTTAGAGGAGATATGAGGAAACATGGATGGCAACTTCCTTACCATCCTCT 374 Query 141 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 434 Query 201 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 494 Query 261 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCAGATCCTGCAGACCGTGGAGT 320 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 495 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCGGACCCTGCAGACCGTGGAGT 554 Query 321 TTTCCGGTCTAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTAGCAAAGGA 380 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 555 TTTCCGGTCGAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTATCAAAGGA 614 Query 381 TATAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCATGATGGCACGTGTGT 440 || ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| Sbjct 615 TACAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCGTGATGGAACTTGTGT 674 Query 441 AGAGGATACAGAAAATGGAAGTAACAAGAAATTGGAGTCATCAGAAAGATCTTCTCTCCT 500 | ||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||| Sbjct 675 ACAGGATCCAGAAAATGAAACTAACAAGAAACTGGAGTCATCAGAAAGATCTTCTCTCCT 734 Query 501 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTATGTAGTTGTTGCAGTGGAAAAGATGAATC 560 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 735 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTCTGTAGTTGTTGCAGTGGAAGAGATGAATC 794 Query 561 TTCTGAGCAGATGAGTGAGGATGGGATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 620 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 795 TTCTGAGCAGATGAGTGAGGATGGAATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 854 Query 621 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 914 Query 681 CAGGTGGCTAAACAACTGCATTGGCAAGCGGAATTACCGAAAATTCTTCAGTCTTATGGT 740 ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 915 CAGGTGGCTAAACAACTGCATCGGCAAGCGGAATTACCGAAAATTCTTTAGCCTTATGGT 974 Query 741 ATCAGCTAtttttttGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 ATCAGCTATTTTTTTGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 1034 Query 801 TTTACTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 860 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 TTTGCTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 1094 Query 861 GCTAATTCCATTTGTTATAGTTGTTGGTGTCTGTACAGTATTAGCAATGCTGGCAACGTT 920 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 1095 GCTAATTCCATTTGTTATAGTCGTTGGTGTCTGCACTGTATTAGCAATGCTGGCAACGTT 1154 Query 921 ACCACTTGCTCAGCTTTTCTTCTTCCACATTCTTCTCATTAAGAAGGGAATCAGTACATA 980 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1155 ACCACTTGCTCAGCTTTTCTTCTTCCATATTCTTCTCATTAAGAAGGGAATCAGTACATA 1214 Query 981 CGACTACATAGTTGCGCTTAGGGAGCAAGAGCAAGAACTAGAAGCTGGAGGCGGTCAACA 1040 ||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1215 CGATTACATAGTTGCACTTAGGGAGCAAGAGCAAGAGCTAGAAGCTGGAGGTGGTCAACA 1274 Query 1041 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTCAA 1100 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1275 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTTAA 1334 Query 1101 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1335 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1394 Query 1161 CGTAGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCTGTTGTAGAGGA 1220 ||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1395 CGTGGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCAGTGGTTGAGGA 1454 Query 1221 ACGTGTCAAGAAGAAGCCCCAACCTGTGAAGATTAGTCCTTGGACTCTAGCTCGTCTCAA 1280 ||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 1455 ACGCGTCAAGAAGAAGCCCCAACCTGTGAAGATCAGTCCATGGACTCTAGCACGTCTCAA 1514 Query 1281 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATCCAGCC 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1515 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATTCAGCC 1574 Query 1341 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTCGGAAGCAG 1400 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1575 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTTGGTAGCAG 1634 Query 1401 TGGCCGTAGAATGTTCCCAACAAAATATGAAGGTGTTAATAATAACGGGAAGCAGCGAAG 1460 |||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||| Sbjct 1635 CGGCCGTAGAATGTTCCCAGCAAAATTTGAATCTGTTAATAATAGCGGGAAGCAGCGAAG 1694 Query 1461 GCAATC-AAAGCGCATACGGTTACCAGCAGAACTACCTCTAGAACCGCTGATGAATGTTC 1519 |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1695 GCAATCTAAA-CGCATACGGTTACCAGCTGAACTACCTCTAGAACCGCTGATGAATGTTC 1753 Query 1520 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1754 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1813 Query 1580 CAAGAAGCGCGTTTCAGACAAGCCGGGCAATGTCAGGGTCTGGTAATGTTATGGTGACAT 1639 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1814 CAAGAAGCGCGTTTCAGACAAGCCGAGCAATGTCAGGGTCTGGTAATGTTATGGTGACCT 1873 Query 1640 CTTCACCAGAGAGCAGCTTAGACTCGCATGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1699 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1874 CTTCACCAGAAAGCAGCTTAGACTCGCACGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1933 Query 1700 CAGAGGATGCAGCGCAGCTTAATGGGTTCTCTTCTGCTGTTGGTCTGATGGGTCAACAGA 1759 ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1934 CAGAGGATGCAGCACAGCTCAATGGGTTTTCTTCAGCTGTTGGTCTGATGGGTCAACAGA 1993 Query 1760 GAGGacaacaacaacaacaacaacTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 1819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1994 GAGGACAACAACAACAACAACAACTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 2053 Query 1820 GTGATGGCTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 1879 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2054 GTGATGGTTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 2113 Query 1880 ACAAATCAAGATGAGA 1895 |||||||||||||||| Sbjct 2114 ACAAATCAAGATGAGA 2129 Score = 130 bits (70), Expect = 4e-29 Identities = 98/111 (88%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 1957 TGGCTGCTGCCTTCTATCAGGAAGAAGTCAACATTTGAGGATCTTGAAGGTATAAA-A-A 2014 |||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||| | | | Sbjct 2143 TGGCTGCTGCATTCGATCAAGAAAAAGTCAACATTTGAGGATCTTGAAGATATTATTACA 2202 Query 2015 -TGCCTGCCAAAAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGAGAATTC 2064 |||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 2203 GTGCCTGCCAAGAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGTGAGTTC 2253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77627919310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5