BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69570.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg476091 jgi|Araly1|476091|fgenesh2_kg.2__1221__AT1G69570.1 2438 0.0 > Ahg476091 jgi|Araly1|476091|fgenesh2_kg.2__1221__AT1G69570.1 Length=1673 Score = 2438 bits (1320), Expect = 0.0 Identities = 1596/1719 (93%), Gaps = 59/1719 (3%) Strand=Plus/Plus Query 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGctctcctatttct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGCTCTCATATTTCT 60 Query 61 acatgtctctctctctattctgacgtgtaattttctctcttcctctctcccttctAATGC 120 |||||||||||||||||||||||||||| | || || ||||| ||||| |||| Sbjct 61 ACATGTCTCTCTCTCTATTCTGACGTGT-A------CT-TT--TCTCT--CTTCT-ATGC 107 Query 121 ACTATCTATCGTCATTAATACCAACCTCAAG-CCC--CTTGTTTTCTCTTCATGCTCttt 177 ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct 108 ACTATCTATCGTCATTAATACCAACCTCAAGCCCCTTCTTGTTTTCTCTTCATACTCTTT 167 Query 178 ttttCTTCCCTCCGATCTTCATAGAGaaaaaaaaaCCAGAGGAAACCATTTATTAGACCT 237 |||| || |||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 168 TTTT-TT-CCTCCGATCTTCATAGAG-AAAAAAAA-CAGAGGAAACCATTTATTAGACCT 223 Query 238 TCATATCTCTAGAACTTTCATAATTAGTTATGTCTAAATCTAGAGATACGGAGATAAAGT 297 |||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 224 TCATATTTCTAGAAGTTTCATAATTAGTTATGTCTAAATCTATAGATAGGGAGATAAAGT 283 Query 298 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATTGTTATGATCCGTCGTCGTTGT 357 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| Sbjct 284 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATCGTTATGATCCATCGTCTTTGT 343 Query 358 CCCCTGTTCACGATGTTTCTTCTGATCCAAGCAAGGAGGATTCGTCTTCTTCTTCATCTT 417 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| Sbjct 344 CCCCTGTTCACGATGTTTCTTCTGATCAAAGCAAGGAGGATTCGTCATCTTCTTCTTCTT 403 Query 418 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGGTTaaa-aaaaGTGA-GCAAGAGAG 475 |||||||||||||||||||||||||||||||||||| ||| || ||||| | ||||||| Sbjct 404 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGG-CAAATAATAGTGATG-AAGAGAG 461 Query 476 TAACAAATTCAAAGATCCATATATATTATCCGATCTAAACGAACCACCAAAAGCAGTATC 535 ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 462 TAACAGATTCAAAGATCCATACATATTATCAGATCTAAACGAACCACCAAAAGCAGTATC 521 Query 536 TGAGATTTCATCACCAAGAAGTTCCAAGAACAACTGTGATCAACAGAGCGAGATCACAAC 595 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 522 TGAGATTTCATCACCAAGAAGTTCCAAGAACAATTGTGATCAACAGAGCGAGAT-----C 576 Query 596 AACAACTACCACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCGGACAA 655 || || | |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 577 -ACGAC-A--ACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCAGACAA 632 Query 656 GCTTATTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 715 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 GCTTCTTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 692 Query 716 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 752 Query 776 ATCTATGAGGAACGTTCCTGTTGGCTCAGGTCGTCGCAAGAACAAAGGATGGCCTTCTTC 835 |||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| Sbjct 753 ATCTATGAGGAACGTTCCCGTTGGCTCAGGCCGTCGCAAGAACAAAGGATGGGCTTCTTC 812 Query 836 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCGGGGACGATCCT 895 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 813 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCCGGGACGATCCT 872 Query 896 TAGTTTCGGTTCTTCGGAGTCTTCGGTTACAGAGACTGGTAAGCATCAGTCAGGTGATAC 955 ||| |||||||||||||| |||||||| |||||| ||||||||||||| ||| | ||||| Sbjct 873 TAGCTTCGGTTCTTCGGAATCTTCGGTGACAGAGGCTGGTAAGCATCAATCAAGAGATAC 932 Query 956 AGCAAAGATAAGTGCTGATTCAGTTTCTCAAGAAAATAAAAGCTACCAAGGGTTTCTTCC 1015 | |||| ||||| |||||||||||||| |||||| |||| |||||||||||||||||| Sbjct 933 AACAAAAATAAGCGCTGATTCAGTTTCCCAAGAACGCAAAACCTACCAAGGGTTTCTTCC 992 Query 1016 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1052 Query 1076 TCCTAACGCTAGTTTCTACCCTGTCCCCTTCTACTGGGGATGCACGGTTCCGATATACCC 1135 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1053 TCCTAATGCTAGTTTCTACCCTGTCCCCTTCTATTGGGGATGCACGGTTCCGATATACCC 1112 Query 1136 TACCTCAGAGACTTCATCATGTTTAGGAAAACGGTCAAGAGATCAAACTGAAGGAAGAAT 1195 |||||| || |||||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 1113 TACCTCCGATACTTCACCGTGTTTAGGAAAACGATCAAGAGATCAAACTGAAGGAAGAAT 1172 Query 1196 CAATGATACTAATACAACAATAACTACTACAAGAGCAAGATTGGTCTCAGAATCTCTTAG 1255 |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| Sbjct 1173 CAATGATACTAATACAACGATAACTTCTACAAGAGCAAGATTGGTTTCAGAATCTCTTAG 1232 Query 1256 AATGAATATCGAAGCTAGTAAGAGCGCTGTGTGGTCTAAGTTACCGACAAAACCCGAGaa 1315 |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1233 AATGAATAGCGAAGCTACTAAGAGCGCGGTGTGGTCTAAGTTACCGACAAAACCCGAGAA 1292 Query 1316 aaaaaCGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGAAACAGCAACAGAAG 1375 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1293 AAAAACGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGTAACAGCAACAGAAG 1352 Query 1376 TAGCTTGGTCTCCGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1435 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 CAGCTTGGTCACTGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1412 Query 1436 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTAATATAGATATATAT-T--- 1491 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1413 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTGATATAGATATATATATATT 1472 Query 1492 CATGAACTGAGAGATTTGAGTTTGGCTAATTGTTACCTTGTGGAAGAAGGCAAAGCTGTG 1551 ||||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 1473 CATGAACTGAGAGATTTGAGTTTAGCTAATTGTTACCTTGTGGAAGAAG-------T-T- 1523 Query 1552 TAGATAGTTTTGTTGTTTGGAACTAAGAGTAGATATAGTATTTACTGTT-GTACACAAAC 1610 | | ||| ||| | | ||||||||||||||||||||||||||||| |||||||||| Sbjct 1524 T---T-GTT--GTT-TC-G-AACTAAGAGTAGATATAGTATTTACTGTTTGTACACAAAC 1574 Query 1611 AGAGATATTTTTGGAGCTGTAGATATTTCTCTCCATTGTGTGATGAAGTTGCAACATATA 1670 ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1575 AGAAATATTTTTGGAGGTGTAGATATTTCTCTCCATTGTGCGATGAAGTTGCAAAATATA 1634 Query 1671 TAAACCTTTAGATTAATA-T--CTACGTGATCTATCTTG 1706 |||||||||||||||||| | ||||||||||||||||| Sbjct 1635 TAAACCTTTAGATTAATAATATCTACGTGATCTATCTTG 1673 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5