BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69610.1 Length=2051 Score E Sequences producing significant alignments: (Bits) Value Ahg476096 jgi|Araly1|476096|fgenesh2_kg.2__1226__AT1G69610.1 2835 0.0 > Ahg476096 jgi|Araly1|476096|fgenesh2_kg.2__1226__AT1G69610.1 Length=1975 Score = 2835 bits (1535), Expect = 0.0 Identities = 1834/1973 (93%), Gaps = 42/1973 (2%) Strand=Plus/Plus Query 39 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTGGTTTGAAACAGTTTGTGTA 98 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 30 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTAGTTTGAAACAGTTTGTGTA 89 Query 99 CGGAAACACTTTCATTGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAA-----TC-TCTT 152 ||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 90 CGGAAACACTTTCATAGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAATCTCTTCTTCTT 149 Query 153 CAGAGTTAATCCAGACAAAGAGACAAGCTTGGTCTTGTTCGAGAAACAGAACACAAAAGA 212 |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| | Sbjct 150 CAGAGTTAATTCAGACAAAGAGACAAGTTTGGTCGTGTTCGAGAAACAGAACACAAACGG 209 Query 213 TTCCTCTGTTTTTGGAGATCATCAAGATCAAAACCAAATTTGTGGAACACAAGACGATGA 272 ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 210 TTCCTCTGTTTACGGAGATTATCAAGATCAAAAGCAAATTTGTGGAACACAAGACGATGA 269 Query 273 TCAGATGGAAAGCTCTCTGGTTTC-GATTAGCAAGAGATGCGAGTTTTATTCCGACAACA 331 |||||||||||| ||||||||||| || ||||||||||||||| ||||||| | | ||| Sbjct 270 TCAGATGGAAAGTTCTCTGGTTTCGGA-TAGCAAGAGATGCGAATTTTATT-C-A-GACA 325 Query 332 AAAGTATCGTTGGTTTTGTAGAAGAACCTAAAGCGTTTAGCTTTAAGTTTCATGAGTATT 391 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 326 AAAGTAGCGTTGGTTTTGTAGAAGAGCCTAAAGCGTTTAGCTTTAAGTTTCATGAGTACT 385 Query 392 CTGCTATTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGTGAGTTTCTCTGATGAAAAAA 451 |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| | Sbjct 386 CTGCTAGTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGGGAATTTCTCTGATGAAAACA 445 Query 452 CGAGTTCCATGGTTTTGGAGAAATCAGAATCAGATGGTTTTATGAAGGAACACGTGAAAG 511 |||||||||||||||||||| ||||||||||||| | | ||||||||||||||| Sbjct 446 CGAGTTCCATGGTTTTGGAGGAATCAGAATCAGA--G------G-AGGAACACGTGAAAG 496 Query 512 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTAAAAGAGTCATTGGTTCACG 571 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||| Sbjct 497 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTGAAAGAATCATTAGTCCACG 556 Query 572 AGAATCTTGTTGGTGGTGAAGACAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 631 ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 557 AGAATTTTGTTGGTGGTCAAGAAAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 616 Query 632 ACCCAAGTTTACAGATTTCAAACTTTGCTTATGgagaagaagaagaagaagagtttatac 691 ||||||||||||||||||| |||||||||||| | | ||||||||||||||| | Sbjct 617 ACCCAAGTTTACAGATTTCTAACTTTGCTTAT------G--G-AGAAGAAGAGTTTATGC 667 Query 692 acagagaagaagagatgaaaatgggctttgatgaacaagaagaGGTATatgatgagtttg 751 | | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 668 AGAAAGAAGAAGAGAGGAAAATGGGTTTTGATGAACAAGAAGAGGTATATGATGAGTTTG 727 Query 752 atgatggttcagattcagatgatgatgagtttgagcatagtgatgtgattgagAAGTTGA 811 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 728 ACGATGGTTCAGATTCAGACGATGATGAGTTTGAGCATAGTGATGTGATTGAGAAATTGA 787 Query 812 AAACAGAATTAAGGACTGCAAGGACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 871 |||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 788 AAACAGAACTAAGGGCCGCAAGAACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 847 Query 872 CTCCATTACAAGAGCTGAAACCACTCAAGATTGAACCAAAACCAGATCAACACAAAGACA 931 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 848 CTCCATTACAAGAGCTGAAACCACTCAAGATCGAACCAAAACCAGATCAACACAAAGACA 907 Query 932 GAATTGCTGAAATTCACAAGGTTTACAAGAACTACGCGGTTAAAATGCGAAAACTCGATG 991 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 908 GAATTGCTGAAATTCACAAGGTTTACAAGAACTATGTGGTTAAAATGCGAAAACTCGATG 967 Query 992 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAAGATTCATCTAAAC 1051 |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| Sbjct 968 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAGGAATCATCTGAAC 1027 Query 1052 CTAGTAGAAACACTGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1111 | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1028 CGAGCAGAAACACCGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1087 Query 1112 AGAAACATACGCTTGAATGTGACCCGAGTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1171 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1088 AGAAACATAAGCTTGAATGTGACCCGATTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1147 Query 1172 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1207 Query 1232 AC-AAAGTCTTGGAATTTGATTCACAGGTTACTACTTATCAATACAACTTAGTAGCTGGA 1290 | |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 1208 -CTAAAGTCTTGGAATTTGATTCTCAGGTTACTACTTATCAATACAATTTAGTTGCTGGA 1266 Query 1291 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAGAAC 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1267 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAAAAC 1326 Query 1351 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCAGAATTTCCTTCAGATT 1410 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1327 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCATAATTTTCTTCAGATT 1386 Query 1411 CCACTTGTTAGAGATGACCGTTCTTCGAAGA--A----GAAATGTAGATATGAAGGAGAA 1464 ||||||||||||||||| ||||| || |||| | |||||||||| | ||||| ||| Sbjct 1387 CCACTTGTTAGAGATGATCGTTCCTCAAAGACTAACAAGAAATGTAGAAACGAAGGGGAA 1446 Query 1465 TTCGCGGTAAAGACTGAAATGTTGAGAGAGATTATCCGAGAGTCGATGAGTGTTTTCTGG 1524 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1447 TTCGCGGTAAAGATTGAAATGTTGAGAGAGATTATCCGAGAATCGATGAGTGTTTTTTGG 1506 Query 1525 GAGTTTCTTTGTGCAGACAAAGACGAGTTTACTTCAATGATGAAAGTTTCTCACCAAACT 1584 ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct 1507 GAGTTTCTTTGTGCAGACAAAGATGAGTTTACTTCAATAATAAAAGTTTCTCACCAAACT 1566 Query 1585 CAAGTCTCTCCACAGGATTCTTTAGACCTTGAGCTCTTGACAGATATCAGAACTCATCTC 1644 |||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 1567 CAAGTCTCTCCACAAGATCCTCTAGACCTTGAGCTCTTGACAGATATCAGAACTGATCTC 1626 Query 1645 CAAAAGAAAGAGAAGAAGCTAAAGGAAATACAAAGAAGCCAAAGCTGTATAGTGAAGAAG 1704 |||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1627 CAAAAGAAGGATAAGAAGCTAAAGGAAATACTAAGAAGCCAAAGCTGTATAGTGAAGAAG 1686 Query 1705 TTAAAGAAGAATGAATCAAAGAGTAGTATTGGTGTGAAGGATGAATTACTAATAGCTAAA 1764 ||||||||||||| |||||||||| | |||||||||||||||| ||||| |||||| || Sbjct 1687 ATAAAGAAGAATGAGTCAAAGAGTAATGTTGGTGTGAAGGATGAGTTACTGATAGCTCAA 1746 Query 1765 ATTGAACTGAGACTGGTTTCAAGAGTGATGTACATGTCGAAACTTACTACTGAGAAGTTA 1824 |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| Sbjct 1747 ATTGAACTGAGACTGGTTTCAAGAGTGATGAACATGTCGAAACTTACCACCGAGAAGTTA 1806 Query 1825 CATTGGTGTCAGG-AGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCATATGGA 1883 ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1807 GTTTGGTGT-AGGGAGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCACATGGA 1865 Query 1884 ACCATATTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCGTATAGATTAGATCATAGATG 1943 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1866 ACCATCTTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCCTATAGATTAGATCATAGATA 1925 Query 1944 TTGGAACAATATGGCTTCATCAGATCCAGGAAGATGTCTTTTTGTTGTTGTTC 1996 |||||| | |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1926 TTGGAATATTATGGCTTCA---GATCCGGGAAGATGTCTTTTTGTTGTTGTTC 1975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77132746125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5