BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69850.1 Length=2092 Score E Sequences producing significant alignments: (Bits) Value Ahg926293 jgi|Araly1|926293|scaffold_201854.1 1495 0.0 Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574 499 3e-140 > Ahg926293 jgi|Araly1|926293|scaffold_201854.1 Length=1743 Score = 1495 bits (809), Expect = 0.0 Identities = 902/947 (95%), Gaps = 6/947 (1%) Strand=Plus/Plus Query 49 agaaagaaagagagagaatggaagtggaagaagagGTCTCAAGATGGGAAGGCTACGCCG 108 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AGAGAGAGAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 65 Query 109 ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG 168 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 66 ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG 125 Query 169 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 126 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC 185 Query 229 TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT 288 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 186 TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT 245 Query 289 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 305 Query 349 CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA 408 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 306 CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA 365 Query 409 CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG 468 ||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| | Sbjct 366 CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG 425 Query 469 AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG 528 | |||||||||||||||||||||||| | |||||||| ||||||||||| || ||||||| Sbjct 426 AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG 485 Query 529 TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC 588 |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 486 TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC 545 Query 589 CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 648 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 546 CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 605 Query 649 GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG 708 ||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 606 GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG 665 Query 709 GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 768 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 725 Query 769 GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC 828 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 726 GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC 785 Query 829 TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT 888 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 786 TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG 845 Query 889 CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC 942 ||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||| Sbjct 846 CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC 905 Query 943 AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG 989 ||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 906 AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG 952 Score = 1208 bits (654), Expect = 0.0 Identities = 748/794 (94%), Gaps = 3/794 (0%) Strand=Plus/Plus Query 1051 GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT 1109 ||||||||||||||||||||||||||||| | ||| |||||| ||||| ||||||||||| Sbjct 952 GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT 1009 Query 1110 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1069 Query 1170 GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC 1229 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1070 GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC 1129 Query 1230 TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT 1289 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1130 TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT 1189 Query 1290 ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC 1349 || |||||||||||||| || ||||| || ||||| ||||| |||||| ||||||||||| Sbjct 1190 ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC 1249 Query 1350 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA 1409 ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 1250 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA 1309 Query 1410 CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT 1469 || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1310 CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT 1369 Query 1470 TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT 1529 |||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 1370 TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429 Query 1530 GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG 1589 |||||| |||||||||||||||||||||||||| |||| ||||||||||| || |||||| Sbjct 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG 1489 Query 1590 CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA 1649 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1490 CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA 1549 Query 1650 AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT 1709 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1550 AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC 1609 Query 1710 TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1769 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1669 Query 1770 TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG 1829 || ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1670 TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG 1729 Query 1830 ATGGGCAACTTTTG 1843 ||| ||||||||| Sbjct 1730 GTGGTCAACTTTTG 1743 > Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574 Length=1737 Score = 499 bits (270), Expect = 3e-140 Identities = 627/795 (79%), Gaps = 41/795 (5%) Strand=Plus/Plus Query 69 gaagtggaagaagagGTCT-CAAGATGGGAAGGCTACGCCGATTGGAGAAACAGAGCAGC 127 |||||| ||| || |||| ||| ||||||||||||||| || ||||| |||||||| || Sbjct 10 GAAGTGCAAGGTGATGTCTCCAA-ATGGGAAGGCTACGCTGACTGGAGGAACAGAGCCGC 68 Query 128 CGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCGTCTTAGTGGTGGAGATATT 187 |||||||||||||||||| |||||||| |||||||| |||||||| | |||||||||||| Sbjct 69 CGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTGGAGATATT 128 Query 188 AGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTT-GTGCTATACCT-AAGAGAATAC 245 ||||||||||||| ||| ||||| || || || ||| ||| | || || |||| | | | Sbjct 129 GGAGAATCTAGCGTTTTTAGCGAACGCAAGCAA-CTTGGTGTTGTATCTGAAGA-ACTTC 186 Query 246 ATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATTTCATGGGCACAGCTTTT 305 ||||||||||||| | | | |||| | | ||| || |||| |||||||| ||| || || Sbjct 187 ATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACCGCCTTC 246 Query 306 CTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCTCCACTTTTC-AAATCTT 364 || || |||||||||||||| |||||| ||||||| ||||||||||| ||| ||||| Sbjct 247 CTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCAC-ATTCGTCATCTT 305 Query 365 CCTCATCTCAGCTTCCATCGAGTTTTTGGGA-TTGATCATACTCACAATTCAAGCTCGGA 423 |||| |||| || ||||| |||||| ||||| || ||| | |||||||| ||||| | | Sbjct 306 CCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTT-ATCCTGCTCACAATCCAAGC-CCGT 363 Query 424 C-ACCATCCTTAATGCCTCCAT-CGTGCGATAG-TC--C--C---A-CATGTGAAGAAG- 471 | || || |||||||| || | | ||| | || || | | | |||| || | | Sbjct 364 CGTCCGTCTTTAATGCCGCC-TCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTCGT 422 Query 472 TGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAG-CTTTGGGTGTG 530 || ||||||| ||||| ||| | || |||||||| || || || || | || | || || Sbjct 423 TG-GTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGT-GTCTCTAGGAGTC 480 Query 531 GGAGGGATCAAAGGTTCATTAG-CATCTCACGGAGCAGAACAGTTTGATGAGAGTACACC 589 |||||||| ||||| ||||| | | || ||||||||||| || || || ||||| || || Sbjct 481 GGAGGGATAAAAGGGTCATT-GCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGCC 539 Query 590 TAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACT-TCGTGTTTTGTCT-TGCTTGT 647 ||||||||| ||||| || || || ||||| ||||||| | ||||| ||||| | | ||| Sbjct 540 TAAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTAT-GTGTTCTGTCTCT-CATGT 597 Query 648 GGAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGG 707 |||||||| || || || ||||| || || ||| | || ||||||||||| ||||| ||| Sbjct 598 GGAGCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTGG 657 Query 708 GGATTCGGTGTTTCTACCAT-TGC-TATCTTCGTCTCTATTCTCATCTTTCTCTCT-GGA 764 ||||| || || || ||||| | | ||| ||| |||| ||| || ||||||||| | || Sbjct 658 GGATTTGGAGTCTCCACCATCTCCATAT-TTC-TCTCCATTATCGTCTTTCTCT-TAGGT 714 Query 765 TCAAGATTTTATAGGAACAAGATTCCAT-GTGGAAGTCCTCTCACCACAATCTTGAAGGT 823 || || ||||||| ||| || | ||| | ||||||||||||||||||||||||||||||| Sbjct 715 TCGAGGTTTTATAAGAA-AAAAATCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGGT 773 Query 824 TCTTCTTGCGGCTTC 838 |||||| || ||||| Sbjct 774 TCTTCTCGCAGCTTC 788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78694446170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5