BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69850.1

Length=2092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926293 jgi|Araly1|926293|scaffold_201854.1                       1495    0.0   
  Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574                    499    3e-140


> Ahg926293 jgi|Araly1|926293|scaffold_201854.1
Length=1743

 Score = 1495 bits (809),  Expect = 0.0
 Identities = 902/947 (95%), Gaps = 6/947 (1%)
 Strand=Plus/Plus

Query  49   agaaagaaagagagagaatggaagtggaagaagagGTCTCAAGATGGGAAGGCTACGCCG  108
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  6    AGAGAGAGAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG  65

Query  109  ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG  168
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  66   ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG  125

Query  169  TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  126  TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC  185

Query  229  TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT  288
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  186  TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT  245

Query  289  TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT  305

Query  349  CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA  408
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  306  CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA  365

Query  409  CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG  468
            ||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |
Sbjct  366  CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG  425

Query  469  AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG  528
            | |||||||||||||||||||||||| | |||||||| ||||||||||| || |||||||
Sbjct  426  AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG  485

Query  529  TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC  588
            |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  486  TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC  545

Query  589  CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG  648
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  546  CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG  605

Query  649  GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG  708
            ||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  606  GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG  665

Query  709  GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA  768
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA  725

Query  769  GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC  828
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  726  GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC  785

Query  829  TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT  888
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  786  TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG  845

Query  889  CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC  942
            ||||||||||||| |||||||| ||| |||||||||||||||||||||      ||||||
Sbjct  846  CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC  905

Query  943  AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG  989
            ||||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct  906  AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG  952


 Score = 1208 bits (654),  Expect = 0.0
 Identities = 748/794 (94%), Gaps = 3/794 (0%)
 Strand=Plus/Plus

Query  1051  GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT  1109
             ||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||||||
Sbjct  952   GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT  1009

Query  1110  CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC  1169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1010  CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC  1069

Query  1170  GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC  1229
             ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1070  GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC  1129

Query  1230  TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT  1289
             ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1130  TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT  1189

Query  1290  ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC  1349
             || |||||||||||||| || ||||| || ||||| ||||| |||||| |||||||||||
Sbjct  1190  ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC  1249

Query  1350  GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA  1409
             ||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct  1250  GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA  1309

Query  1410  CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT  1469
             || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  1310  CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT  1369

Query  1470  TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT  1529
             |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct  1370  TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT  1429

Query  1530  GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG  1589
             |||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct  1430  GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG  1489

Query  1590  CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA  1649
             |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  1490  CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA  1549

Query  1650  AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT  1709
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  1550  AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC  1609

Query  1710  TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC  1769
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1610  TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC  1669

Query  1770  TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG  1829
             || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1670  TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG  1729

Query  1830  ATGGGCAACTTTTG  1843
              ||| |||||||||
Sbjct  1730  GTGGTCAACTTTTG  1743


> Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574
Length=1737

 Score =  499 bits (270),  Expect = 3e-140
 Identities = 627/795 (79%), Gaps = 41/795 (5%)
 Strand=Plus/Plus

Query  69   gaagtggaagaagagGTCT-CAAGATGGGAAGGCTACGCCGATTGGAGAAACAGAGCAGC  127
            |||||| |||  || |||| ||| ||||||||||||||| || ||||| |||||||| ||
Sbjct  10   GAAGTGCAAGGTGATGTCTCCAA-ATGGGAAGGCTACGCTGACTGGAGGAACAGAGCCGC  68

Query  128  CGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCGTCTTAGTGGTGGAGATATT  187
            |||||||||||||||||| |||||||| |||||||| |||||||| | ||||||||||||
Sbjct  69   CGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTGGAGATATT  128

Query  188  AGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTT-GTGCTATACCT-AAGAGAATAC  245
             ||||||||||||| ||| ||||| || || || ||| ||| | || || |||| | | |
Sbjct  129  GGAGAATCTAGCGTTTTTAGCGAACGCAAGCAA-CTTGGTGTTGTATCTGAAGA-ACTTC  186

Query  246  ATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATTTCATGGGCACAGCTTTT  305
            ||||||||||||| | | | |||| | | ||| || |||| |||||||| ||| || || 
Sbjct  187  ATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACCGCCTTC  246

Query  306  CTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCTCCACTTTTC-AAATCTT  364
            || || |||||||||||||| |||||| ||||||| |||||||||||  |||   |||||
Sbjct  247  CTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCAC-ATTCGTCATCTT  305

Query  365  CCTCATCTCAGCTTCCATCGAGTTTTTGGGA-TTGATCATACTCACAATTCAAGCTCGGA  423
            |||| |||| || ||||| |||||| ||||| || ||| | |||||||| ||||| | | 
Sbjct  306  CCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTT-ATCCTGCTCACAATCCAAGC-CCGT  363

Query  424  C-ACCATCCTTAATGCCTCCAT-CGTGCGATAG-TC--C--C---A-CATGTGAAGAAG-  471
            |  || || |||||||| || | | ||| | || ||  |  |   | |||| || |  | 
Sbjct  364  CGTCCGTCTTTAATGCCGCC-TCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTCGT  422

Query  472  TGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAG-CTTTGGGTGTG  530
            || ||||||| ||||| ||| | || |||||||| || || || || | || | || || 
Sbjct  423  TG-GTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGT-GTCTCTAGGAGTC  480

Query  531  GGAGGGATCAAAGGTTCATTAG-CATCTCACGGAGCAGAACAGTTTGATGAGAGTACACC  589
            |||||||| ||||| ||||| | | || ||||||||||| || || || ||||| || ||
Sbjct  481  GGAGGGATAAAAGGGTCATT-GCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGCC  539

Query  590  TAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACT-TCGTGTTTTGTCT-TGCTTGT  647
            ||||||||| ||||| || || || ||||| ||||||| | ||||| ||||| | | |||
Sbjct  540  TAAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTAT-GTGTTCTGTCTCT-CATGT  597

Query  648  GGAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGG  707
            |||||||| || || || ||||| || || ||| | || ||||||||||| ||||| |||
Sbjct  598  GGAGCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTGG  657

Query  708  GGATTCGGTGTTTCTACCAT-TGC-TATCTTCGTCTCTATTCTCATCTTTCTCTCT-GGA  764
            ||||| || || || ||||| | | ||| ||| |||| ||| || ||||||||| | || 
Sbjct  658  GGATTTGGAGTCTCCACCATCTCCATAT-TTC-TCTCCATTATCGTCTTTCTCT-TAGGT  714

Query  765  TCAAGATTTTATAGGAACAAGATTCCAT-GTGGAAGTCCTCTCACCACAATCTTGAAGGT  823
            || || ||||||| ||| || | ||| | |||||||||||||||||||||||||||||||
Sbjct  715  TCGAGGTTTTATAAGAA-AAAAATCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGGT  773

Query  824  TCTTCTTGCGGCTTC  838
            |||||| || |||||
Sbjct  774  TCTTCTCGCAGCTTC  788



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 78694446170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5