BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69890.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951876 jgi|Araly1|951876|scaffold_2200008.1 1238 0.0
> Ahg951876 jgi|Araly1|951876|scaffold_2200008.1
Length=895
Score = 1238 bits (670), Expect = 0.0
Identities = 815/883 (92%), Gaps = 18/883 (2%)
Strand=Plus/Plus
Query 81 TATTAG-AAGATGGATTTTTTCAATCAAGCTAAAGCCGTAAGGATGCGTAACGTCCATGA 139
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TATTAGCAA-ATGGAGTTTTTCAATCAAGCTAAAGCCGTAAGGATGCGTAACGTCCATGA 70
Query 140 TAAGTATCTAACAGCGGATGAGGACGAGGAAACGGTGACTCAAGACAGGAATGGTTCCGA 199
||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 71 AAAGTATCTAACGGCGGACGAAGACGAGGAAACGGTGACACAAGACAGGAATGGTTCCGA 130
Query 200 CAAGAGAGCTAGATGGATTGTCGAGCCGGTTCGTGGTTCCTTTGAAGTGATCCGTTTAAG 259
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 131 CAAGAGAGCTAGATGGACCGTCGAGCCGGTTCGAGGTTCCTTTGAAGTAATCCGTTTGAG 190
Query 260 GAGCTGCTACGGTAACTACCTCACCGCTTCGAATGAGCGGTTCTTGCTCGGAGCCACTGG 319
||||||||||||||| |||||||| || || || || |||||||||||||| ||||||||
Sbjct 191 GAGCTGCTACGGTAATTACCTCACTGCCTCAAACGAACGGTTCTTGCTCGGTGCCACTGG 250
Query 320 ACGTAAAGTGGTCTTGTCTAAACCGGCTCGACTCGACTCCTCCGTAGAGTGGGAACCGGT 379
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 251 ACGTAAAGTGGTCTTGTCAAAACCGGCTCGACTCGACTCGTCCGTCGAGTGGGAACCGGC 310
Query 380 GAGAGAAGGTTCCAAAATGAAGCTCAAGACTAGATACGGAAACTTGCTTCGAGCCAACGG 439
||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 311 GAGAGAATGTTCCAAAATGAAGCTTAAGACGAGATACGGCAACTTGCTTCGAGCCAACGG 370
Query 440 TGGACTTCCTCCATGGCGTAACTCTGTCACGCATGACACTTCTCATGTATTGGATTCTTT 499
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| || ||
Sbjct 371 TGGACTTCCTCCGTGGCGTAACTCTGTCACGCATGACACTCCTCATGTATCGGACTCCTT 430
Query 500 CTTGTGGGATGTTGATGTGGTTGAGATTTTGGTGGGAACG---ACG--A-CTCC-G---- 548
|||||||||||||||||||||||||||||||||||| ||| || | |||| |
Sbjct 431 CTTGTGGGATGTTGATGTGGTTGAGATTTTGGTGGGCACGGCCACTCCAGCTCCAGATCC 490
Query 549 -GCTCCAGCTCCAGCTCCGGTGACAACTCCTCCGCCACATAGGAGGCCGTCGTACACGTA 607
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 491 AGCTCCAGCTCCAGCTCCGGTGACAACTCCGCCGCCACATAGGAGACCGTCGTACTCGTA 550
Query 608 TTCTCCGGTTTCTAGAACATCTTCAGAAAAATCCGAAGAAGAGTTGACCGTGCCGCCACC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 551 TTCTCCGGTTTCTAGAACATCTTCAGAAAAATCCGAAGAAGAGTTGACCGTGCCGCCGCC 610
Query 668 GAAATCTGAAGGGAGGCCTATTTACTACCACATCGCGGACGAAGAAGGACACGTGGAGGA 727
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AAAATCTGAAGGGAGGACTATTTACTACCACATCGCGGACGAAGAAGGACACGTGGAGGA 670
Query 728 AGAATCAGCCGTTGGATATGCGTTGACTTTCAAAGGAAATAGCGTGGAACAGTTGACGCA 787
|||||||||||||||||| || |||||||| || ||||| ||||||||||||||||||||
Sbjct 671 AGAATCAGCCGTTGGATACGCTTTGACTTTTAATGGAAACAGCGTGGAACAGTTGACGCA 730
Query 788 GGCGTTGCAAGAAGAGACTAGTATGGATGATGTTGTGGTCTGTACACGCCATCCTTCAAA 847
||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||
Sbjct 731 GGCGTTGCAAGAAGAGACTAGCATGGATGATGTTGTGGTGTGTACACGCAATCCTTTAAA 790
Query 848 CGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCTAATAGTGGAACAATGCATGTCAT 907
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 791 CGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCAAATAGTGGAACAATGCATGTCGT 850
Query 908 TCTAGTACCCTCAAGTACTT---AA-CGGCAAGCTGTGTGGTT 946
|||||||||||||||||||| || |||||||||||||||||
Sbjct 851 TCTAGTACCCTCAAGTACTTCTTAAACGGCAAGCTGTGTGGTT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5