BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70180.2
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476142 jgi|Araly1|476142|fgenesh2_kg.2__1272__AT1G70180.2 1487 0.0
> Ahg476142 jgi|Araly1|476142|fgenesh2_kg.2__1272__AT1G70180.2
Length=1896
Score = 1487 bits (805), Expect = 0.0
Identities = 1012/1108 (91%), Gaps = 30/1108 (3%)
Strand=Plus/Plus
Query 6 AAATCCAAACCTATCTCGTAAAATTTGCGTAGCGATTGATGAGAGCATGTGAAGAAGCCA 65
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 3 AAATCCAAACCTATCTCGTAAAATTTTCGTTCCGATTGATGAGAGCATGT---GAAGCCA 59
Query 66 CTAGATGAGTCAGGTCTCTTTGGTTTGGCACTGCGCAGCACTTTCAAAGCCCAAGCAAGA 125
|||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 60 CTAGATGAGTCAGGTCTCTTTGGTTTCGCACTGCGCAGCACTTTCAAAG--C---CAAGA 114
Query 126 GTCCGTCGTCACGAACGTCTTCTTCGTCTCCACCGATTCTTCACGAACCTGTTTACTCTC 185
|| | ||||||||||||| ||||||||||||||||||||||||| |||| |||| |||
Sbjct 115 GT-C--CGTCACGAACGTCGTCTTCGTCTCCACCGATTCTTCACGTACCTTTTTA--CTC 169
Query 186 TTTCTGTGATTTTTGAGTAGATTCGGCTTCGTACGATTAGGGTTTGAAGGAGGTGATTGT 245
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 170 --TCTGTGA-TTTTGAGTAGATTCGGCTTCGTATGATTAGGGTTTGAAGGAGGTGATTGT 226
Query 246 GGTGTCTTTCGTTGTTTGTGGTTTTATATCACTGTAAGTT--AGAATTGGCTCCAGTTGA 303
||||||||||||| || |||||||| | |||||||||||| ||||||||||||||||||
Sbjct 227 GGTGTCTTTCGTTCTTCGTGGTTTTGTTTCACTGTAAGTTAGAGAATTGGCTCCAGTTGA 286
Query 304 TTTTCCTAGGGTTTTCACAAATGTCGGAAGGTTCGAGACGGAGTAGGGTTACTATAACTC 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 287 TTTTCCTAGGGTTTTCACAAATGTCGGAAGCTTCGAGACGGAGTAGGGTTACTATAACTC 346
Query 364 TAGGTCGTAGCGGTCAGGTGGTGAATCGAGCTGCAAGTGATATAGATGATGGGTATGAGT 423
|||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 347 TAGGGCGTAGCGGTCAGGTGGTGAATCGAGCTGCAAGTGATTTAGATGATGGTTATGAGT 406
Query 424 TACCTAGAGTTGGGACTAAGCGGTCTGTCAAAGAGAGATTAGGGAATCCGTTAGATAGTT 483
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 407 TGCCTAGAGTTGGGACTAAGCGGTCTGTCAAAGAAAGATTAGGGAATCAGTTAGATAGTT 466
Query 484 CTGTTTATGGTGGAGAAGAGGTGGTCAGTAAAAGGCAAAGAGGGGAAGCAAGTTTCAGTG 543
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 467 CTGTTTATGGTGGAGAAGAGGTGGTCAGTAAAAGGCAGAGAGGGGAAGCAAGTTTGAGTG 526
Query 544 GAAATGATTTGCAGATCAGTCGAAATGATCTCCGATTCAAACTGATGCAAAAGAATGCCC 603
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 527 GAAATGATTTGCAGATCAGTCAAAATGATCTCCGATTCAAACTGATGCAAAAGAATGCCC 586
Query 604 AGAGACGAGCTCAGAGCGATGAAGGCTGCACTATGGATCTTCGTGAAAAGCTCTCAAGGA 663
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 587 AGAGGCGAGCTCAGAGCGATGAAGGCAGCACTATGGATCTTCGTGAAAAGCTCTCAAGGA 646
Query 664 GTGAGCAGCCTCCTCGTAGCCTTGATACAAGACCTCGTATGGCTGAGCCGAGGGATCGTC 723
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 647 GTGAGCAGCCTCCTCGTAGCCTTGATATTAGACCTCGTATGGCTGAGCCGAGGGATCTTC 706
Query 724 CTTTATCTTCATCAAGAACTGCTCGTGGTTCCTCTCAGATGATTTCATCAAGTAGTTCGC 783
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 707 CTTTACCTTCATCAAGAACTGCTCGTGGTTCCTCTCAGATGATTTCATCACGTAGTTCGC 766
Query 784 ACCCTGCATGGGCTCTGGAAGATTTACGACGAAGGTCTCCAGAGAGATTTGTGGATACTT 843
| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 767 ATCCTGCATGGGCTCTGGAAGATTTAAGACGAAGGTCTCCAGAGAGATTTATGGATACTT 826
Query 844 CCAGGGGTCGATCGCCGCCAAGAAATGCTGGAAGTTTCATTGGCATTCCAAGGGAACCTT 903
||||||||| |||||||||||||||| ||||| || |||||||||||||||||| || |
Sbjct 827 CCAGGGGTCTATCGCCGCCAAGAAATACTGGACGTGTCATTGGCATTCCAAGGGCTCCAT 886
Query 904 CCCCTCCAAGAAATGGTAGAAGGATGATTGGCAGT-GCAAGGGATAGATCACCTCCAAGA 962
|||| |||||||||| | ||||| | ||||||| | | ||||||| |||||| ||||||
Sbjct 887 CCCCCCCAAGAAATGCTGGAAGGGTAATTGGCACTCG-AAGGGATCTATCACCGCCAAGA 945
Query 963 AGT-GATGGAAGGATAATTGGCAGTCCAAGGGATATATCACCTCCAAGAGATGCTGGAAG 1021
| | | | ||||||| || | |||||||||| || ||||||| |||||| | ||||||||
Sbjct 946 AATAG-TAGAAGGATCATCGCCAGTCCAAGGAATTTATCACCACCAAGAAACGCTGGAAG 1004
Query 1022 GAGATTTGGCCCTCCAAGGGATCAG-TCACCGCCAAGAAATGCTGGAAGG-GTAACTGGC 1079
|| | ||||| ||||||| ||| || ||||| |||||||||||||||||| | | ||||
Sbjct 1005 GATAATTGGCTCTCCAAGAGAT-AGATCACCTCCAAGAAATGCTGGAAGGAG-ATTTGGC 1062
Query 1080 AG-TCCAAGGGAT-AGATCACCTCCAAG 1105
| |||||||||| | |||||| |||||
Sbjct 1063 -GCTCCAAGGGATCA-ATCACCGCCAAG 1088
Score = 1452 bits (786), Expect = 0.0
Identities = 960/1041 (92%), Gaps = 24/1041 (2%)
Strand=Plus/Plus
Query 930 ATTGGCAGTGCAAGGGATAGATCACCTCCAAGAAGTGATGGAAGGATAATTGGCAGTCCA 989
||||||| | |||||| | ||| || ||||||| || ||||||| ||||||||| || |
Sbjct 865 ATTGGCATTCCAAGGGCTCCATCCCCCCCAAGAAATGCTGGAAGGGTAATTGGCACTCGA 924
Query 990 AGGGATATATCACCTCCAAGAGAT-GCTGGAAGGAGAT-TTGGCC-CTCCAAGGGA-TCA 1045
|||||| ||||||| |||||| || | | ||| | ||| | ||| ||||||| | | |
Sbjct 925 AGGGATCTATCACCGCCAAGAAATAG-TAGAA-G-GATCATCGCCAGTCCAAGGAATTTA 981
Query 1046 GTCACCGCCAAGAAATGCTGGAAGGGTAACTGGCAGTCCAAGGGATAGATCACCTCCAAG 1105
||||| |||||||| ||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct 982 -TCACCACCAAGAAACGCTGGAAGGATAATTGGCTCTCCAAGAGATAGATCACCTCCAAG 1040
Query 1106 AAATGCTGGAAGGAGAATGGGCCCTCCAAGGGATCAGTCACCGCCAAGGAGCACCAGAAG 1165
|||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1041 AAATGCTGGAAGGAGATTTGGCGCTCCAAGGGATCAATCACCGCCAAGGAGCACCAGAAG 1100
Query 1166 CTTCAGTAGTAATTCTAGGGCTCTGTCCCCAGCTAGAAATATGGGAAGCTACATGAGTTC 1225
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1101 CTTCAGTAGTAATTCTAGGGCTCTGTCCCCAGCTAGAAATATTGGAAGCTACATGAGTTC 1160
Query 1226 TTCTCAGGGTTTTTCCCCTCCTAGGAATCCTAGAAGCTACATGGGTTCTTCCAGGGGTTC 1285
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1161 TTCTCGGGGGTTTTCCCCTCCTAGGAATCCTGGAAGCTACATGGGTTCTTCCAGGGGTTC 1220
Query 1286 TCCCCCACGTAGTAACATTGAAGATTTTCATGGACGAAGCAGGATGCTTGATAATATGAG 1345
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1221 TCCTCCACGTAGTAACATTGAAGATTTTCATGGACGAAGCAGGATGCTTGATGATAGGAG 1280
Query 1346 AGCATCGCCATATCCTGTTAGAGGTGTACTAAATGGTCAAGCGCCATCAAGTGGTGCTCC 1405
|||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1281 AGCATCCCCGTATCCTGTTAGAGGTTTACTAAATGGTCAAGCGCCAGCAAGTGGTGCTCC 1340
Query 1406 TTTCGCCAGGCCAATGTTACCTCCTCCAGTCCCAAACCCACATCCATTGCCTCCATTGAG 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TTTCGCCAGGCCAATGTTACCTCCTCCAGTCCCAAACCCACATCCATTGCCTCCATTGAG 1400
Query 1466 CCAGCTTCCTCCACTTGGAAGTATTATGCAGAACAGTCCCTTCTCTGTGGACGAGCCTCT 1525
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 1401 CCAGCTTCCTCCACTTGGAAGTATGATGCAGACCAGTCCCTTCTCTGTGGAAGAGCCTCT 1460
Query 1526 ATCAGTTGATGGCTTTCTAAATTCAATTGGACTTGGAAAATACTCCCTTGCCTTTAAGAG 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 ATCAGTTGATGGCTTTCTAAATTCAATTGGACTTGGAAAATACTCCCTTGCCTTTAAGAG 1520
Query 1586 AGAGGAAGTGGATATGACCACAATAAAGCAGATGAAAGAAAGTGATCTAAAAGATCTCAT 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 AGAGGAAGTGGATATGACCACAATAAAGCAGATGAAAGAAAGTGATCTAAAAGATCTCAT 1580
Query 1646 CATACCAATGGGTCCAAGGAAGAAGATTCTTCAGGCTATAGCGTCCCTTCCAACAAGGTA 1705
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1581 CATACCAATGGGTCCAAGGAAGAAGATTCTTCAGGCTATAGCGTCTCTTCCAACAAGGTA 1640
Query 1706 GCAATGA-A---CGGATCTCGCCTCTAGCTGCTTCTCACTCTTTTT-GGTCTTGTTAGCC 1760
|| |||| | ||| | | |||||| ||||||||||||||||||| ||||||||||||
Sbjct 1641 GCGATGACAAGACGGGTTTGGCCTCTCGCTGCTTCTCACTCTTTTTTGGTCTTGTTAGCG 1700
Query 1761 TCTATGCGGGTCGAAACTATGATAACTTTTTTGAGATCCAACCCGAAACTTTTCTCTCCG 1820
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1701 TCTATGCGGATCGAAACTATGATAA-TTTTTTGAGATCCAACCCGAATCTTTTCTCTCCG 1759
Query 1821 GATGATTGTAGGCAGCAGAACTTTCTTTTGTAATTCT-CTCTGTTATGGAttttt-t--- 1875
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1760 GATAATTGTAGGCAGCAGAACTTTCTTTTGTAATTCTTCTCTGTTATGGATTTTTGTTTT 1819
Query 1876 cttttt-CTGGTATACAATTTGTTAACCCAAGCACAGCCTAATTGTGAAATGTCGACGGT 1934
|||||| ||||||||||||||||||| | ||||| |||||||||||||||| |||||||
Sbjct 1820 CTTTTTTCTGGTATACAATTTGTTAAAC-AAGCA--GCCTAATTGTGAAATG-CGACGGT 1875
Query 1935 GTTTTGGTGTAATCCAAACAC 1955
|||||||||||||||||||||
Sbjct 1876 GTTTTGGTGTAATCCAAACAC 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5