BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70260.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926338 jgi|Araly1|926338|scaffold_201899.1 1803 0.0
> Ahg926338 jgi|Araly1|926338|scaffold_201899.1
Length=1168
Score = 1803 bits (976), Expect = 0.0
Identities = 1097/1157 (95%), Gaps = 2/1157 (0%)
Strand=Plus/Plus
Query 101 AGAGGGAGATAGATGGAGGTGAAGGTTAGAAGAGATGAGTTGGTACCCTTTGTAGCAATG 160
||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 9 AGAGGGAGAGAGATGGAGGTGAAGGTTAGAAGAAATGAGTTGGTACCTTTTGTAGCAATG 68
Query 161 GCTATAATGGAAGCATGCACGATTGCTCTTACGATAATGGCGAAAACGGCGTTGACGGGA 220
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 69 GCGATAATGGAAGCGTGCACGATTGCTCTAACGATAATGGCCAAAACGGCGTTGACGGGA 128
Query 221 GGGATGAGTCCTTTTGTGTTCGTTGTTTACACAAACGCTTTTGGATCTATTCTTCTTCTT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GGGATGAGTCCTTTTGTGTTCGTTGTTTACACAAACGCTTTTGGATCTATTCTTCTTCTT 188
Query 281 CCATTTTCTTTCTTATTTCACAGGAATGAGAGAACAGAACAATCTATCTTCTCTTGGCCA 340
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CCATTTTCTTTCTTCTTCCACAGGAATGAGAGAACAGAACAATCTATCTTCTCTTGGCCA 248
Query 341 CTCCTCGTTCGCGTTTTCTTTCTAGGTTTCACCGGGATATTTATGTTCCAAAACTTGGCA 400
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CTCCTCGTTCGTGTTTTCTTTCTAGGTTTCACCGGGATATTTATGTTCCAAAACTTGGCA 308
Query 401 TTTGTGGGACTACGCTTCAGCTCACCAATAGTAGTATGTGCAATGGGATTGCAAATCCCG 460
|||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 309 TTTGTGGGACTAAGGTTCAGCTCACCAATAGTCGTATGTGCAATGGGACTGCAAATCCCT 368
Query 461 TCCTTCTCCTTCCTGCTCTCTATTATTCTCGGAAGGAGCAAATTGGATTGGAGAAACACG 520
||||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 369 TCCTTTTCCTTCTTGCTCTCTATTCTTCTCGGAAAGAGCAAGTTGGATTGGAGAAACACG 428
Query 521 AGTACGAGGGCTAAACTGATGGGAACAATAGTCTCGTTAAGCGGAGCTTTTGTTGAAGAG 580
|| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 429 AGCACGAGGGCTAAACTGATGGGAACAATAATCTCATTAAGCGGAGCATTTGTTGAAGAG 488
Query 581 TTGTACAAAGGTCCATTCATAAGACCAGCTTCGTCTGCTTCCCCAAATCGTTTTCTTAAA 640
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 489 TTGTACAAAGGTCCTTTCATAAGACCAGCTTCGTCTGCTTCCCCAACTCGTTTTCTTAAA 548
Query 641 TCAGTCCCTAAACTTTTGGTCTACTACAACCTCCCCGACAATTGGTTTCTCGGCTGTATC 700
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 549 TCGGTCCCTAAACTTTTGGTCTACTACAACCTCCCCGACAATTGGTTTCTTGGCTGTATC 608
Query 701 TTTTTGGCCG-TCGCTGTTTTTTCTGTCTCCCTGTTCAATGTTGTTCAGACAGGGACGGT 759
|||||||| | | || ||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 609 TTTTTGGCGGCT-GCGGTTTTCTCTGTCTCCCTCTTCAATGTTATTCAGACAGGGACGGT 667
Query 760 AAAAAAGTATCCACATGTGATGAAAGTGGCTTCGTTTTACAGCATAGTCGGGACGATCCA 819
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 668 AAAACAGTATCCACATGTGATGAAAGTGGCTTCGTTTTACAGTATAGTCGGGACGATCCA 727
Query 820 ATGTCTACTATTCTCGTTATTTATGGAAAGAGACCTTAGTGCATGGAAGATCCAACCTAA 879
||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 728 ATGTCTAATATTCTCGTTATTTATGGAGAGCGACCTAAGTGCATGGAAGATCCAACCTAA 787
Query 880 CTTCGATCTTTATCTCATTATCGCCACGGGAACATTCGGAAGTGTAATACGAACAAGTGT 939
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 788 CTTCGATCTTTATCTCATTATCGCCACGGGAACATTCGGAAGTGTGATACGAACAAGCGT 847
Query 940 ACACGTAAAGTGCACCCAAATGAAAGGACCTTATTACGTGCCATTGTTCAAACCCTTTGG 999
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 848 ACACGTAAAGTGCACTAAAATGAAAGGACCTTATTACGTGCCATTATTCAAACCCTTTGG 907
Query 1000 TATCTTTTGGGCAACACTCTTTGGTACCAGCTTCTTCGTCAACAGTCTTCACTACGGCAG 1059
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 908 TATCTTTTGGGCTACACTCTTTGGCACCAGCTTCTTCGTCAACAGTCTTCACTACGGCAG 967
Query 1060 TGTGTTAGGAGCAGCCATAGCTGGTGTGGGATATTTCACAGTGTCTTGGGGACAATTGAA 1119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 968 TGTGTTAGGAGCAGCCATAGCTGGTGTGGGATATTACACAGTGTCTTGGGGACAACTGAA 1027
Query 1120 GGAAAGCGAAGAAAAACAAAGTTCAAATGAAGAAAGAAAATCCATCAAAACTATTCATCA 1179
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGAAAGCGAAGAAAAACAAAATCCAAATGAAGAAAGAAAATCCATCAAAACTATTCATCA 1087
Query 1180 TCGCGATGAAGATGAATACAAAGTTCCATTACTTATTAACCAGGAAGAAAGTCCTGTATG 1239
| || | ||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1088 TTGCCAAGAAGATGAACACAAAGTTCCATTGCTTATTAATCAGGAAGAAAGTCCTGTGTG 1147
Query 1240 AATTTTGTATTATATAT 1256
|||||||||||||||||
Sbjct 1148 AATTTTGTATTATATAT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5