BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70420.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476162 jgi|Araly1|476162|fgenesh2_kg.2__1292__AT1G70420.1 1042 0.0
Ahg472633 jgi|Araly1|472633|fgenesh2_kg.1__2587__AT1G23710.1 137 1e-31
> Ahg476162 jgi|Araly1|476162|fgenesh2_kg.2__1292__AT1G70420.1
Length=940
Score = 1042 bits (564), Expect = 0.0
Identities = 795/896 (89%), Gaps = 58/896 (6%)
Strand=Plus/Plus
Query 105 ATGCAAGTTATTTCTCCTTCGTCTCCGGCGCCGAGATTCGCCGGAAAAGAGAGATTTTCA 164
||||||||| || ||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGCAAGTTGTTGCTCCTTCATCTCCGGCGTCGAAATTCGCCGGAAAAGAGAGATTTTCA 60
Query 165 GAAGTTTACGGCGAACTAAACGACGATTTTGGCTCTAAACTGAAGATTAGTTCTAAAGAG 224
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 61 GAAGTTTACGGCGAACTAAACGACGATTTTGGCTCAAAACTGAAGATAAGTTCTACAGAG 120
Query 225 GAAGAAAACAGAGATGATGATTCATGGTGGAATCAGAACGGAACTGATAAAGATGATGAA 284
||||||||||||||| | | | | | | ||| | || || || || || |
Sbjct 121 GAAGAAAACAGAGAT-A--A--C--G----A-T--GAA-G-AA--GA-AA-GA-GA--A- 156
Query 285 GGAAGAGAAGAAGATTTCTCATTCGCAAGTGTAAACGCAGATAATTCACCGATAACCGCA 344
| ||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 157 G-AAGAG-------TT-CTCATTCGCAAGTGTAAACGCAGAGAATTCACCGATAACCGCA 207
Query 345 GATGAAGCATTCGAAGACGGTCAGATCCGACCGGTTTATCCTCTGTTTAACCGGAATATT 404
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 208 GAAGAAGCGTTCGAAGATGGTCAGATCCGACCGGTTTATCCTCTGTTTAACCGGAATTTT 267
Query 405 TTCTTCGATGATCCAGAGGAAAAAACTTTACGTTCACCTCTCAAGAAACTCTTCGTTGAA 464
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 268 TTCTTCGATGATCCAAAGGAGGAAACTTTACGTTCACCTCTCAAGAAACTCTTCGTTGAA 327
Query 465 TCCACAACCAC--a-gaagaagaagaagaaga-G--TCAGATACGGTGGGTCCATATTGT 518
|||||||||| | ||||||||||||||||| | ||||| ||||||||||| | ||||
Sbjct 328 GCCACAACCACCGAAGAAGAAGAAGAAGAAGAAGAGTCAGAGACGGTGGGTCCGTTTTGT 387
Query 519 TCATGGACAAATCGTACGGTGGAGCAAGCATCACCAGAGACTTGTCGGAAAAGTAACTCA 578
|||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 388 TCATGGTCAAATCGTACGGTGGAGGAAGCATCACCGGAGACTTGTCGGAAAAGTAACTCA 447
Query 579 ACAGGGTTCTCAAAGCTATGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAGTGATGGA 638
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 448 ACAGGGTTTTCAAAGCTATGGAGGTTTAGAGATCTTGTTTTAAGAAGTAACAGTGATGGA 507
Query 639 AAAGATGCGTTTGTGTTTTTAAGCAACGGCTCTTCATCTACATCGTCGACGTCGTCTACG 698
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | ||
Sbjct 508 AAAGATGCGTTTGTGTTTTTAAGCAACGGCTCTTCATCTTCGTCGTCGACATCG-C--CG 564
Query 699 GCGGCGAGATTGAGTGGTGTGGTGAAGTCGTCGGAGAAAGGGAAAGAGAAAACGAAGACG 758
| |||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 565 A-----A-ATTGAGCGGTGTG---AAGTCGTCGGAGAAAGGGAAAGAGAAAACGAAGACG 615
Query 759 GATAAGAAGAAGGATAAGATGAGAACGAAATCGGCACATGAGAAATTGTATATGAGAAAC 818
|| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GAGAAGAAGAAG-A-A-GATGAGAACGAAATCGGCACATGAGAAATTGTATATGAGAAAC 672
Query 819 AGAGCAATGAGAGAAGAAGGGAAACGAAGATCGTATCTTCCGTATAAACATGTTGGGTTC 878
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||
Sbjct 673 AGAGCAATGAGAGAAGAAGGAAAACGAAGATCGTATCTACCGTATCAACATGTTGGATTC 732
Query 879 TTCACTAATGTTAATGGTTTAACCAGAAATGTTCATCCCTATTGATTAAACCGATCTGTC 938
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |
Sbjct 733 TTCACTAATGTTAATGGTTTAACCAGAAATGTTCATCCATTTTGATTAAACCGGTCT-T- 790
Query 939 GTACCAAAATCTCTACCGACAAATCTTTGCCTTT-TGTATATATCTAACCtttttt 993
|| |||||| ||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 791 GTTTCAAAATTTCTACCGACAAATCTTTGCCTTTGTGTAT-TATATAACCTTTTTT 845
Score = 128 bits (69), Expect = 9e-29
Identities = 109/126 (87%), Gaps = 11/126 (9%)
Strand=Plus/Plus
Query 1002 TGTGTATTATAAAACCTTCTTTTTGTAAGTAAAAGTGAAACTTTACTTATTAACTTTT-C 1060
||||||||||| |||| | |||||||||||||||||||||||||||||||| | ||| |
Sbjct 824 TGTGTATTATATAACC-T-TTTTTGTAAGTAAAAGTGAAACTTTACTTATTTA-TTTCAC 880
Query 1061 GTTT-GTATCATTTGATTAGttttttttCTTCTTTGATGTAAAGTATTTTTTGATTTTGA 1119
|||| || ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 881 GTTTTGTCTCATTTGATTAATTTTTTTT-TT-----ATGTAAAGTATTTTCTGATTTTGA 934
Query 1120 AAGTAG 1125
||||||
Sbjct 935 AAGTAG 940
> Ahg472633 jgi|Araly1|472633|fgenesh2_kg.1__2587__AT1G23710.1
Length=1111
Score = 137 bits (74), Expect = 1e-31
Identities = 122/145 (84%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 513 TATTGTTCATGGACAAATCGTACGGTGGAGCAAGCATCACCAGAGACTTGTCGGAAAAGT 572
|||||||| ||| || | | || || | | |||| || || |||||||| |||||||||
Sbjct 497 TATTGTTCTTGGTCAGGTGGAACCGTTGCGGAAGCGTCGCCGGAGACTTGCCGGAAAAGT 556
Query 573 AACTCAACAGGG-TTCTCAAAGCTATGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAG 631
||||| || ||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 557 AACTCGAC-GGGATTTTCTAAGCTTTGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAG 615
Query 632 TGATGGAAAAGATGCGTTTGTGTTT 656
|||||||| ||| |||||||| |||
Sbjct 616 TGATGGAAGAGACGCGTTTGT-TTT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5