BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70530.1 Length=1941 Score E Sequences producing significant alignments: (Bits) Value Ahg926380 jgi|Araly1|926380|scaffold_201941.1 3007 0.0 Ahg952145 jgi|Araly1|952145|scaffold_40000001.1 1099 0.0 > Ahg926380 jgi|Araly1|926380|scaffold_201941.1 Length=1992 Score = 3007 bits (1628), Expect = 0.0 Identities = 1848/1953 (95%), Gaps = 19/1953 (1%) Strand=Plus/Plus Query 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54 ||||||||||| |||||||||||||||| | ||||||||| ||||||| ||||||| Sbjct 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGTTTTTTTATAAACCCTTCT 82 Query 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112 ||||||||||||||||||| | || |||||||||||||||| |||||||||||| | ||| Sbjct 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140 Query 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171 |||||||||||||||||||||||| || |||||| ||||| |||||||| || |||||| Sbjct 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199 Query 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAACT-TAACCGT 227 || ||||||||||||||||| || |||||||| ||||| | |||||| | ||||||| Sbjct 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAA-TCTAACCGT 258 Query 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287 ||||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||| Sbjct 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318 Query 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347 |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378 Query 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438 Query 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467 | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498 Query 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527 ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558 Query 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618 Query 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647 |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678 Query 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738 Query 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGTCA 767 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGTCA 798 Query 768 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCTTTTGTTCTGTTGGT 827 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 799 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCATTTGTTCTGTTGGT 858 Query 828 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACACGCCAAGAAGCAAAGAGAGAAGAAGCA 887 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 859 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACATGCCAAGAAGCAAAGAGAGAAGAAGCA 918 Query 888 ACTAGGGTCATTATTCATGCTTGCGAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 947 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 919 GCTAGGGTCATTATTCATGCTTGCAAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 978 Query 948 CGAGAGGGCTACCGATTACTTCAGCGACAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1007 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 979 CGAGAGGGCTACCGATTACTTCAGCGATAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1038 Query 1008 TGTCTATAAGGGAGTTCTTACTAATGGTAAGACTGTTGCAGTAAAGAGACTGTTCTTCAA 1067 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1039 TGTCTATAAGGGAGTTCTTACTAACGGTAAGACTGTTGCGGTAAAGAGACTGTTCTTCAA 1098 Query 1068 CACAAAGCAATGGGTGGATCATTTCTTCAACGAAGTTAATCTAATAAGCCAAGT-AGACC 1126 ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | | | Sbjct 1099 CACAAAGCAATGGGTGGATCATTTCTTTAACGAAGTCAATTTAATAAGCCAAGTCA-ATC 1157 Query 1127 ACAAGAACCTTGTTAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTCT 1186 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1158 ACAAGAACCTTGTGAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTGT 1217 Query 1187 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTCGTAAGAAAAGATGTTCAAC 1246 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1218 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTTGTAAGAAAAGATGTTCAAC 1277 Query 1247 CGTTGAATTGGGCAAAGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1306 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 CGTTGAATTGGGCGAGGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1337 Query 1307 TTCACGAGGAGTCAAATCTTAGAATCATACATAGAGATATTAAGCTGAGTAATATCCTTT 1366 ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1338 TTCACGAGGAGTCGAATCTTAGAATCATACATAGAGACATTAAGCTGAGCAATATCCTTT 1397 Query 1367 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1457 Query 1427 ACAAGACTCATATCAGCACTGCCATCGCCGGTACACTAGGCTACATGGCACCAGAATATG 1486 ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||| Sbjct 1458 ACAAGACTCATATTAGCACCGCCATCGCCGGGACACTAGGCTACATGGCTCCAGAATATG 1517 Query 1487 TAGTACGAGGAAAACTAACTGAGAAAGCAGACGTTTATAGTTTTGGAGTTCTTATGATTG 1546 |||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 1518 TAGTACGAGGAAAACTGACCGAGAAAGCAGACGTTTACAGTTTCGGAGTTCTTATGATTG 1577 Query 1547 AAGTTATAACCGGAAAACGTAACAATGCCTTCGTACAAGACGCTGGTTCGATCCTACAAT 1606 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1578 AAGTTATAACCGGAAAACGTAACAACGCCTTCGTACAAGAAGCTGGTTCGATCCTACAAA 1637 Query 1607 CGGTATGGAGTCTGTACAGAACAAGCAATGTGGAAGAGGCAGTGGATCCAATCTTAGGTG 1666 ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || | Sbjct 1638 CGGTATGGAGTCTGTACAGAACAAGAAATCTGGAAGAAGCAGTGGATCCAATCTTGGGGG 1697 Query 1667 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATTGGGCTTCTCTGTGTTCAAG 1726 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1698 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATCGGGCTTCTCTGCGTTCAAG 1757 Query 1727 CAGCGTTTGATCAGCGGCCTGCGATGTCTGTGGTTGTGAAAATGATGAAAGGGAGTTTGG 1786 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1758 CAGCGTTTGATCAGCGGCCTGCGATGTCTGCGGTTGTGAAAATGATGAAAGGGAGTTTGG 1817 Query 1787 AGATTCATACGCCGACGCAACCACCGTTTCTGAATCCAGGAAGTGTAGTAGAGATGAGAA 1846 ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 1818 AGATTCACACACCGACGCAACCGCCGTTTCTGAATCCAGGGAGTGTAGTAGAGATGAGGA 1877 Query 1847 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCAAGGAGTGACTACA 1906 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1878 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCGAGGAGTGACTACA 1937 Query 1907 TAACCGAGGGTTCGAGTTTCTTTGAACCTAGAT 1939 |||||||||||||||||||||| |||||||||| Sbjct 1938 TAACCGAGGGTTCGAGTTTCTTCGAACCTAGAT 1970 > Ahg952145 jgi|Araly1|952145|scaffold_40000001.1 Length=822 Score = 1099 bits (595), Expect = 0.0 Identities = 720/778 (93%), Gaps = 17/778 (2%) Strand=Plus/Plus Query 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54 ||||||||||| |||||||||||||||| | ||||||||| ||||||| ||||||| Sbjct 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGTTTTTTTATAAACCCTTCT 82 Query 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112 ||||||||||||||||||| | || |||||||||||||||| |||||||||||| | ||| Sbjct 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140 Query 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171 |||||||||||||||||||||||| || |||||| ||||| |||||||| || |||||| Sbjct 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199 Query 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAACT-TAACCGT 227 || ||||||||||||||||| || |||||||| ||||| | |||||| | ||||||| Sbjct 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAA-TCTAACCGT 258 Query 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287 ||||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||| Sbjct 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318 Query 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347 |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378 Query 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438 Query 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467 | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498 Query 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527 ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558 Query 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618 Query 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647 |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678 Query 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738 Query 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGT 765 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGT 796 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72942819175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5