BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70570.2
Length=2240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926384 jgi|Araly1|926384|scaffold_201945.1 2146 0.0
> Ahg926384 jgi|Araly1|926384|scaffold_201945.1
Length=1833
Score = 2146 bits (1162), Expect = 0.0
Identities = 1314/1387 (95%), Gaps = 11/1387 (1%)
Strand=Plus/Plus
Query 71 TTCAGGCGAGAGACAATCAATCTGATGAAAGCTCTTCTAAATCCTGAATCTTCCTTTTGT 130
||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTCAGGCGAGA-AAAAT-AATCTGATGAAAGCTCTTCTAAATCCTGAATCTTTCTTTTGT 58
Query 131 CTTTCTTCGATTTCTTCCTCACAGATCAAGAGGTCTTTACACTTT-AACGGATTGAG--- 186
|| || ||||| |||||||||||||||||||||||| | || ||| |||||| ||||
Sbjct 59 CTCTCGTCGATCTCTTCCTCACAGATCAAGAGGTCTCTCCA-TTTCAACGGACTGAGTTC 117
Query 187 TTCTTCATGTCTCCGGTTTCCTTTAACCGATTTTGCCGGACGTTTACG--GCGGCGGAAG 244
||||||||||||||||||| |||||||||||| || ||| || |||| || |||||||
Sbjct 118 TTCTTCATGTCTCCGGTTTGCTTTAACCGATTGTGGCGGCCG--TACGCAGCAGCGGAAG 175
Query 245 CTCACTGGTGGGTTGTGTATAAAGGCAGTTTTGGACTCTGCAATGATGGAGCAGTTAGGG 304
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 CTCACTGGTGGGTTGAGTATAAAGGCAGTGTTGGACTCTGCAATGATGGAGCAGTTAGGG 235
Query 305 CTTAAGGAATCAGATGTTAAGAATCCGGCTTTATCTTCTACTTATCGGGGATCGGAGATT 364
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTAAGGAATCTGATGTAAAGAATCCGGCTTTATCTTCTACTTATCGGGGATCGGAGATT 295
Query 365 CCGAAGCCAAACCTTACTGTTCTTGATGCTCAAGCTAGGGTTTGTACAGGTCCGACTCAG 424
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 296 CCGAAGCCAAACCTTACGGTTCTTGATGCTCAAGCTAGGGTTTGTACAGGGCCGACTCAG 355
Query 425 ACTAGGCCTCTTAGTGAAGAACAAGCTTTTAAGGTGTTTGATACTATATTAAGATCAGCT 484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 ACTAGGCCTCTTAGTGAAGAACAAGCTTTTAAGGTGTTTGATACTATTTTAAGATCAGCT 415
Query 485 AGAGGGGAGCTAAAAGATGAAGAGCCTGTTTCAAAGGCGCAACTTGGGGCtttttttGCG 544
||||||||||| ||||| || || || ||||||||||||||||||||||| |||||||||
Sbjct 416 AGAGGGGAGCTGAAAGACGAGGAACCAGTTTCAAAGGCGCAACTTGGGGCATTTTTTGCG 475
Query 545 GGAATGACAATACGTGCAAATGCATTTCCGGAGGAAACTCAATGGAGCGAAGGGGAAAAG 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 476 GGAATGACAATACGTGCAAATGCATTTCCAGAGGAAACTCAATGGAGCGAAGGTGAAAAG 535
Query 605 CGGGCGATGGATGTGTTTTGGCCACTCTTGGTTAGGGCACTACCTCCTGATGTGCTCTTT 664
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 536 CGGGCGATGGATGTGTTTTGGCCACTCTTGGTTCGGGCATTACCTCCTGATGTGCTCTTT 595
Query 665 ATTGCTGATCCTGAAGGCTCTCTTTTGGGTACGGGAAATTCTGTTGGACCAACTTTTGTT 724
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATTGTTGATCCCGAAGGCTCTCTTTTGGGTACGGGAAATTCTGTTGGACCAACTTTTGTT 655
Query 725 GGTAATGAAACTCGTGAGATGAGATTGGTTGGTGCGCTTAGAGAGATTTTGGCTGGAGGT 784
|| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 656 GGCAATGAAACTAGAGAGATGAGATTGGTTGGCGCGCTAAGAGAGATTTTGGCTGGAGGT 715
Query 785 CACTTAGGTTATGAGGAGGTTAAGGGTGTTTTAAGAGACGTTCTTCCGCTTGAAACGGAA 844
||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 716 CACCTGGGTTATGAGGAGGTTAAGGGTGTTTTAAGAGATGTTCTTCCGCTTGCAACGGAA 775
Query 845 GGTAGTTTAAACTCGGGAGTAAGCGAGTCATTGCTTTCGGCGTTTTTGATTGGTCAACGT 904
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 776 GGTAGTTTGAACTTGGGAGTAAGCGAGTCATTGCTTTCGGCGTTTTTGATTGGGCAACGT 835
Query 905 ATGAACAGAGAAACAGATCGCGAGCTTAAAGCTTACTGCCTTGCATTCGATGACGAACAT 964
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATGAACAGAGAAACAGACCGCGAGCTTAAAGCTTACTGCCTTGCATTCGATGACGAACAT 895
Query 965 GGGGCTCCTCCAGTTGCTGATGTCAAATCCTTAACCCATTATGGCGAGCCTTATGATGGG 1024
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGGGCTCCTCCAATTGCTGATGTCAAATCCTTAACCCATTATGGCGAGCCTTATGATGGG 955
Query 1025 AATACTCGATTCTTTCGAAGCACTTTGTTTGTGGCCGCAGTTAGATCTTGCTGTGGTGAA 1084
||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||
Sbjct 956 AATACTCGATTCTTTCGAAGCACACTGTTTGTGGCTACAGTTAGATCCTGCTATGGTGAA 1015
Query 1085 TCTTCATTGCTCCATGGCGTGGAATGGATGCCTCCAAAAGGGGGTGTGACTGAGGAACAA 1144
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1016 TCTTCATTGCTCCATGGCGTGGAATGGATGCCTCCAAAGGGGGGTGTGACTGAGGAACAA 1075
Query 1145 ATGCTGAAGTTTATGGGAGCAAACACACACTTGTCTGTTCAGCAGGCAAAAGAACTCATC 1204
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATGCTGAAGTTTATGGGAGCAAATACACACTTGTCTGTTCAGCAGGCAAAAGAACTCATC 1135
Query 1205 GAGGACGAGAAGGCTGGATTTGCATATCTCAGTCTACGAGAAGCTCGGCCATCTTTATAT 1264
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1136 GAGGACGAGAAGGCTGGATTTGCATATCTCAGTCTACGGGAAGCTCGGCCGTCTTTATAT 1195
Query 1265 TCACTAATCGAAATGAGGGAGCATATAAAGAAGCGCCCTCCTCTGGCAACAACGGAGAAA 1324
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1196 TCGCTAATCGAAATGAGGGAGCATATAAAGAAACGCCCTCCTCTGGCAACAACGGAGAAA 1255
Query 1325 GTTCAGCAATTTGTGAGGGCGACAGGGAAAGAAGCCATTGTTGCTGGGTTTTACCATGAA 1384
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 1256 GTTCAGCAATTTGTGAGGGCGACAGGGAAGGAAGCTATTGTAGCTGGGTTTTACCACGAA 1315
Query 1385 GGCTACGAAGAGCCTCTCTTAATGCTTATGAGACGAAGAGGTGTCCATTCTGGTTTGGTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGCTACGAAGAGCCTCTCTTAATGCTTATGAGACGAAGAGGTGTCCATTCTGGTTTGGTG 1375
Query 1445 GTTAAGG 1451
|||||||
Sbjct 1376 GTTAAGG 1382
Score = 675 bits (365), Expect = 0.0
Identities = 423/451 (94%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 1565 GAGGAGGGGGCCCTTTCAATGACAACACGGGTGCGAGCTGCAAGTGCATCAAAAGGGTTT 1624
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1385 GAGGAGGGGGCCCTCTCAATGACAACACGGGTGCGAGCAGCAAGTGCATCAAAAGGGTTT 1444
Query 1625 CCAGTCAACTACTGTTCCGGGTTTCGTTCATTGAGTTCGGACACGGCTCTAGAAGCTGAC 1684
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CCAGTTAACTACTGTTCTGGATTTCGTTCATTGAGTTCGGACACGGCTCTAGAAGCTGAC 1504
Query 1685 GGTGTATCGCGTCAGAGTTTCAATCTTGAGGTGGATGCGAGA-AACTATGGGTTTGAACC 1743
|| || || ||||||||||||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 1505 GGGGTCTCACGTCAGAGTTTCAATCTTGAGGTGGATGCAAGAGAA-TATGGCTTTGAACC 1563
Query 1744 AACCGAGACTCCACGAACTGATCGTTCGGTGTCAAAGAACATAGAGCTGGGGCTGGCAGC 1803
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1564 AACCGAAACTCCACGAACTGATCGTTCGGTGTCAAAGAACATAGAGCTGGGATTGGCAGC 1623
Query 1804 GCTTCGTGGTGAGAAAGGAGCGGCTTATGATAGAATCGTCCTAAATGCTGGGATTGTGGA 1863
|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 1624 GCTTCGTGGTGAGAAAGGCGCGACTTATGATAGAATTGTCCTAAATGCTGGGATAGTGGA 1683
Query 1864 CCATTTGTTGGGAAGTGAAGGTGCAGAGGATGTAGCTGTGGCAATGGAGAGAGCAAAGGA 1923
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 TCATTTGTTGGGAGGTGAAGGTGCAGAGGATGTAGCTGTGGCAATGGAGAGAGCAAAGGA 1743
Query 1924 AGCTATTGACAGTGGGAAGGCTTTAAAGAAACTTTTGAATTACATAGAAATCTCACGCAA 1983
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1744 AGCTATTGACAGTGGGAAGGCTTTAAAGAAACTTTTGAATTACATAGAGATCTCACGGAA 1803
Query 1984 GATAAAATAGTTC-AACCAACCTGAAGAGTC 2013
||| ||||||||| ||| || ||| ||||||
Sbjct 1804 GATGAAATAGTTCCAAC-AATCTGGAGAGTC 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84331802430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5