BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70590.1 Length=1367 Score E Sequences producing significant alignments: (Bits) Value Ahg476189 jgi|Araly1|476189|fgenesh2_kg.2__1319__AT1G70590.1 1659 0.0 Ahg905601 jgi|Araly1|905601|Al_scaffold_0003_2729 167 2e-40 > Ahg476189 jgi|Araly1|476189|fgenesh2_kg.2__1319__AT1G70590.1 Length=1212 Score = 1659 bits (898), Expect = 0.0 Identities = 1137/1246 (91%), Gaps = 41/1246 (3%) Strand=Plus/Plus Query 11 aaaaaaaaaaaaaaaGCGAATCGTTTACTTACCCCTCTTTGAAACCGACGGTGGTATTTT 70 |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| Sbjct 1 AAAAAAAAAAAAAAAGCGAATCATTTACTTACCTCTCTTTGAAACCGACGGTGGTCTTTT 60 Query 71 TCGCCGGAGAAGATGAAGCAGAGAACCTGGCCTTGTAGATCTGAAGGATCTCGATTCTCC 130 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 61 TCGCCGGAGAAGATGAAGCAGAGAACGTGGCCTTGTAGATCTGAAGGATCTCGATTCACC 120 Query 131 TCCTTATCGTTTTTGAAACCTCACGACAAGGATAAACGGAGTAGAATTTCATCAATCAAC 190 ||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||| Sbjct 121 TCCTTATCGTTTTTGAAACCTCAAGAAAAGGAAAAACGCAGTAGAATTTCTTCAATCAAC 180 Query 191 AAAGCAACGGCGAAGTCAACCACAAGTTCAAGGtcttcttcttcctcttcttcttcACGT 250 | ||||||||||||||||| ||||| |||||||||||||| | ||||| || || | | Sbjct 181 AGAGCAACGGCGAAGTCAAGTACAAGCTCAAGGTCTTCTTC-T--TCTTCATC-TC-C-T 234 Query 251 CCTCCATCGAATGAGTTC---GGAGATTTCTCGATGCTTCCGTATGATATACTGATGAAG 307 || |||||||||| || |||||||||||||||||||||| |||||||||||||||| Sbjct 235 -CT--ATCGAATGAGGTCAGTGGAGATTTCTCGATGCTTCCGTTTGATATACTGATGAAG 291 Query 308 ATTGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCTTTGGTATGTAAATCGTGG 367 || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 292 ATCGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCGTCGGTATGTAAATCGTGG 351 Query 368 AGAGACGCGCTAAAGCCGTTGCGAGAGTCGATGTTGTTGATTCGGTGGGGGAAAAAGTAC 427 ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| | Sbjct 352 AGAGACGCGCTAAAGCCGTTGAGAGAGTCGATGTTGTTGCTTCGTTGGGGGAAAAAGTTC 411 Query 428 AAGCACGGAAGAGGAGGTGTGCGAGCGAATCTCGACAAAGCTCTTGATTCGTTTCTGAAA 487 || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 412 AAACACGGAAGAGGAGGTGTGCGAGCGAATCTCGATAAGGCTCTTGATTCGTTTCTGAAA 471 Query 488 GGAGCTATGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAA-G 546 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 472 GGAGCTGCGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAACG 531 Query 547 AGGAGAGAAGGAGAAAGCGGTGAATTTGTATCGGAGAGCTTCGGAGCTTGGTGATGCTGT 606 |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| Sbjct 532 -GGAGAGAAGGAGAAAGCGGTGAGTTTGTATCGGAGAGCTGCAGAGCTTGGTGATGCTGT 590 Query 607 TGGTCAATGTAATTTAGGGA-TTGCTTATCTTCAAGTTCAACCTTCAAATCCCAAGGAAG 665 |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| | Sbjct 591 TGGTCAATGTAATTTAGGGATTTG-TTATCTTCAAGTTCAACCTTCAAATCCGAAGGAGG 649 Query 666 CGATGAAATGGTTGAAACAATCTGCAGAGAATGGTTATGTTCGAGCACAGTATCAGTTAG 725 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 650 CGATGAAATGGTTGCAACAATCTGCAGAGAATGGTTACGTTCGAGCACAGTATCAGTTAG 709 Query 726 CTCTTTGTTTACACCATGGTCGGGTCGTGCAAACCAATCTGCTTGAAGCTACTAAATGGT 785 ||||||||||||| || || ||||||||| ||||||||||||| ||||||| |||||||| Sbjct 710 CTCTTTGTTTACATCAAGGCCGGGTCGTGAAAACCAATCTGCTAGAAGCTAGTAAATGGT 769 Query 786 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 829 Query 846 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 889 Query 906 CTGATCACGGCCACAGTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 965 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 CTGATCACGGCCACTCTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 949 Query 966 AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGCAGCTGCTA 1025 ||||||||| || || |||||||||||||| || ||||||||||||||| ||||||||| Sbjct 950 CGATGCTGAAATCTGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAATCAGCTGCTA 1009 Query 1026 CTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCAGGCCGTAC 1085 ||| | |||| |||||| |||||||||||||||||||||||| | ||||||| | | | Sbjct 1010 CTCACATCAAGGAAGTTATACACCAACAGCTTTCTGCAACTTCTCGTGGTCATG---T-C 1065 Query 1086 ACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATGACTCCTAT 1145 | | | |||||||||||||||||| |||||||||||| |||||| |||||||| | Sbjct 1066 A---T---A--CACCAAGCCAATAACTGGTGTCCTCTACCAGCTACTCGCTGACTCCT-T 1116 Query 1146 CATTTATTTCAGTGAGGTCTA-GTGATTGGCTAGTTACATGTCCATAACTTAAATTCCAA 1204 | |||||||||| | |||||||||| ||||||||||||||||||| ||||||| Sbjct 1117 -A-------CAGTGAGGTCAAAGTGATTGGCTCGTTACATGTCCATAACTTATATTCCAA 1168 Query 1205 TTTGACAATGTAT-CAATGACAAAACCTTATTTCAGATTTCTACTT 1249 |||| | |||| | ||||||||| |||||||||||||||| |||| Sbjct 1169 TTTGGCCATGTTTTCAATGACAA--CCTTATTTCAGATTTCGACTT 1212 > Ahg905601 jgi|Araly1|905601|Al_scaffold_0003_2729 Length=306 Score = 167 bits (90), Expect = 2e-40 Identities = 153/181 (85%), Gaps = 14/181 (8%) Strand=Plus/Plus Query 959 GAAGGGG-AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGC 1017 ||||||| | |||||||| ||||| |||||||||||||| || |||||||||||||||| Sbjct 139 GAAGGGGCA-ATGCTGAAATCAGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAAGT 197 Query 1018 AGCTGCTACTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCA 1077 ||||||| ||| |||||| |||||| |||||||||||||||||||||| || | || Sbjct 198 AGCTGCTGCTCACGTCAAGGAAGTTATACACCAACAGCTTTCTGCAAC--TT-CTCGT-- 252 Query 1078 GGCCGTACACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATG 1137 | || |||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 253 -G--GT----CATGTCATACACCAAGCCAATAACTGGCGTCCTCTACCAGCTACTCGCTG 305 Query 1138 A 1138 | Sbjct 306 A 306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51160954614 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5