BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70700.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg476200 jgi|Araly1|476200|fgenesh2_kg.2__1330__AT1G70700.3 1458 0.0 > Ahg476200 jgi|Araly1|476200|fgenesh2_kg.2__1330__AT1G70700.3 Length=1221 Score = 1458 bits (789), Expect = 0.0 Identities = 1017/1120 (91%), Gaps = 44/1120 (4%) Strand=Plus/Plus Query 152 TTGAGAGTTTGTCATTGAATATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 211 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 112 TTGAGAGTTTGTCATTG---ATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 168 Query 212 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGGTTAACGATGATGCT-GTCGAAGA- 269 ||||||||||||||||||||||||||||||||||| ||||| | |||| | || | | | Sbjct 169 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGTTTAACAACGATGATGGT-G-ATAT 226 Query 270 ACGAGGGTTAAGTACGAAGGCAGCTAGAGAATGGGGGAAGTCAAAGGTTTTTGCTACTTC 329 |||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||| Sbjct 227 TTTAGGGTTGAGTACGAAGGCAGCTAGACAATTGGGGAAGGCAAAGGTTTTTGCTACTTC 286 Query 330 AAGTTTCATGCCTTCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGGTGCATACCAGTG 389 || || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 287 AACTTACATGCCTGCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGTTGCATACCAGTG 346 Query 390 GGGATCAGTTTCTGCGGCCAATGTTTTCCGCAGATGCCAATTTGGTGGTGCGTTTCAAAA 449 ||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||| || Sbjct 347 GGGATCAGTTTCTGCGGCCAACGTTTTCCGCAGAGGCCAATTCAGCGGTGCGTTTCAGAA 406 Query 450 CGCGA-CGCCGCTTTTACTAGGCGGTTCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 508 ||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 407 CGC-ATCGCCGCTTTTACTAGGAGGATCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 465 Query 509 CACGAGTGGCTTCCTCCGGATCATCTCCTCAGCTCACAATCTTTTATGGCGGAACTATAA 568 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | | Sbjct 466 CACGAGTGGCTTCCTCAGGATCATCTCCTCAGCTCACTATCTTTTATGGTGGAACTGTTA 525 Query 569 GCGTCTTTAATGACATATCTCCCGATAAGGCTCAAGCCATCATGTTATGCGCCGGGAACG 628 |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 526 GCGTCTTTAATGACATATCTCCTAATAAGGCTCAAGCCATCATGTTATGCGCGGGGAACG 585 Query 629 GTTTGAAAGGTGAAACT---G-GAG-A---T--AG---CAA-A-CCGGTTCGAGAAGCTG 673 ||||||||||||||||| | ||| | | || ||| | |||||||| |||| || Sbjct 586 GTTTGAAAGGTGAAACTGGAGAGAGTAGCTTGAAGAAACAACACCCGGTTCGCGAAGTTG 645 Query 674 AAAGAATGTATGGAAAACAAATCCATAACA---CTGCTGCTACCTCATCAAGCTCTGCCA 730 ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 646 AAAGAGTGTATGGAAAACAAATCCATAACACTTCTGCTGCTGCCTCATCAAGCTCTGCCA 705 Query 731 CTCACACTGATAATTTCTCAAGGTGTAGGGAC-ACACCCGTTGCTGCGACTAATGCAATG 789 ||||||||||| || |||||| ||||||||| || ||||||||| |||||||||||||| Sbjct 706 TTCACACTGATACTTACTCAAGATGTAGGGACAAC-CCCGTTGCTACGACTAATGCAATG 764 Query 790 AGCATGATCGAATCATTCAATGCAGCTCCTCGTAACATGATTCCTTCAG---TCCCTCAA 846 ||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||| Sbjct 765 AGCATGATCGAATCATTCAATGCAGTTCCTGGTAACATGATTCCTTCAGTATTTCCTCAA 824 Query 847 GCTCGGAAAGCATCCTTGGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 906 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 825 GCTCGGAAAGCATCCTTAGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 884 Query 907 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 944 Query 967 TCTTCTACTTCTCCTACATAAAACCTACACttttt-tt-tt----tttttttt--ACAAT 1018 ||||||||||||||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 945 TCTTCTACTTCTCCTACCTAAAACCTACACTTTTTATTCTTAAGGTTTTTTTTTTACAAT 1004 Query 1019 GGTAATTTGTAATTGTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1078 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 GGTAATTTGTAATTTTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1064 Query 1079 AGCAGGAGAAGACGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTCTG 1138 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1065 AGCAGGAGAAGGCGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTTTA 1124 Query 1139 TTTATTGTAGGATTACATTATAACTTTAAGAACTAACAGATATATGTTTGTCATGGAC-T 1197 || ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| | | Sbjct 1125 TT-ATTGTAGGATTACTTTAAAACCTTAAGAACTAACAGATATATGTTTGTCATGTATGT 1183 Query 1198 CATGTCTGTCAAGAATTTAATATCAAATAAAATTCACTAT 1237 | | ||||| ||||||||| ||| ||||||||||||||| Sbjct 1184 C--GACTGTCGAGAATTTAAGATCGAATAAAATTCACTAT 1221 Score = 167 bits (90), Expect = 2e-40 Identities = 97/100 (97%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 1 GCAAAGAGTTAAATAAGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCAAAGAGTTAAATAGGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60 Query 61 CCTTGTGGATTCCCActtctttcttctgt-tttcttcttc 99 ||||||||||||||||||||||||||||| ||| |||||| Sbjct 61 CCTTGTGGATTCCCACTTCTTTCTTCTGTGTTT-TTCTTC 99 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5