BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70730.3
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926404 jgi|Araly1|926404|scaffold_201965.1 2911 0.0
Ahg472576 jgi|Araly1|472576|fgenesh2_kg.1__2530__AT1G23190.1 1921 0.0
> Ahg926404 jgi|Araly1|926404|scaffold_201965.1
Length=1798
Score = 2911 bits (1576), Expect = 0.0
Identities = 1710/1776 (96%), Gaps = 4/1776 (0%)
Strand=Plus/Plus
Query 217 TTC-TTCAGATTTG-AAATGGTGTCGTTCAAGGTCTCTCTCGTCTCTACTTCGCCTATTG 274
||| |||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 4 TTCGTTCAGATTTGAAAATGGTGTCGTTCAAGGTCTCTGTAGTCTCTACTTCACCTATTG 63
Query 275 ATGGCCAGAAACCTGGGACTTCTGGACTCCGTAAGAAGGTGAAAGTGTTTAAGCAACCAA 334
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 64 ATGGCCAGAAACCTGGAACTTCTGGACTCCGTAAGAAGGTGAGAGTGTTTAAGCAACCAA 123
Query 335 ATTACCTTGAAAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG 394
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 124 ATTACCTTGAAAATTTTGTTCAGGCAACGTTCAATGCTCTTACTCCTGAGAAAGTTAAAG 183
Query 395 GTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTATTCAGATTA 454
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTGCGACACTTGTGGTCTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTATTCAGATTA 243
Query 455 TAGTAAAGATGGCAGCAGCTAATGGTGTTAGACGTGTGTGGGTTGGTCAAAACAGTCTGC 514
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 244 TAGTTAAGATGGCAGCGGCTAATGGTGTTAGACGCGTGTGGGTTGGTCAAAACAGTCTGC 303
Query 515 TATCAACTCCTGCAGTATCAGCTATTATTCGTGAAAGAGTAGGGGCTGATGGATCTAAAG 574
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 304 TATCAACTCCTGCTGTATCAGCTATTATCCGTGAAAGAGTAGGGGCTGATGGATCTAAAG 363
Query 575 CCACAGGAGCATTTATCTTAACAGCAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCG 634
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CCACCGGAGCATTTATATTAACAGCAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCG 423
Query 635 GAATTAAGTACAATATGGAAAATGGTGGACCAGCTCCTGAATCAATCACTGATAAGATTT 694
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 424 GAATTAAGTACAATATGGAAAATGGTGGACCAGCTCCTGAATCAATTACAGATAAGATTT 483
Query 695 ACGAGAACACAAAGACAATCAAGGAGTACCCAATAGCGGAAGATCTACCCAGGGTTGATA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ACGAGAACACAAAGACAATCAAGGAGTACCCAATAGCGGAAGATCTACCCAGGGTTGATA 543
Query 755 TTTCTACTATTGGTATAACCAGCTTTGAAGGACCTGAAGGAAAGTTTGACGTCGAAGTTT 814
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 544 TTTCTACCATAGGTATAACCAGCTTTGAGGGACCTGAAGGAAAGTTTGACGTCGAAGTTT 603
Query 815 TTGATTCTGCAGATGACTATGTTAAACTAATGAAGTCAATCTTCGACTTTGAATCCATCA 874
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTGATTCCGCAGATGACTATGTTAAACTAATGAAGTCAATCTTCGACTTTGAATCCATCA 663
Query 875 AGAAATTGCTATCTTATCCAAAATTTACTTTCTGCTATGATGCATTGCATGGAGTGGCTG 934
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 664 AGAAATTGCTATCGTCTCCAAAATTTACGTTCTGCTATGATGCATTGCATGGAGTGGCTG 723
Query 935 GAGCATATGCACATCGCATCTTTGTCGAAGAACTAGGTGCACCAGAAAGTTCGTTGTTGA 994
|||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 724 GAGCCTATGCACACCGCATCTTTGTCGAAGAACTAGGTGCACAAGAAAGTTCGTTGTTGA 783
Query 995 ACTGCGTACCCAAGGAGGACTTTGGAGGGGGCCACCCGGATCCCAATCTTACCTATGCTA 1054
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 784 ACTGCGTACCCAAGGAGGACTTTGGAGGAGGCCATCCGGATCCCAATCTTACCTATGCTA 843
Query 1055 AGGAGCTCGTGGCACGCATGGGATTGAGTAAAACTGATGATGCTGGTGGCGAGCCTCCAG 1114
||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 844 AGGAGCTTGTGGCACGCATGGGATTGAGTAAAACTGACGATGCCGGAGGCGAGCCTCCAG 903
Query 1115 AGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTCGGTAAAAGGTTTT 1174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 904 AGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTTGGTAAAAGGTTTT 963
Query 1175 TCGTAACTCCTTCGGATTCAGTTGCTATAATTGCTGCAAATGCTGTTGGGGCCATACCAT 1234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 964 TCGTAACTCCTTCGGATTCAGTTGCCATAATTGCTGCAAATGCTGTTGGGGCCATACCAT 1023
Query 1235 ACTTCAGCTCTGGTTTAAAAGGTGTTGCTAGGAGCATGCCGACCTCAGCTGCACTTGATG 1294
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1024 ACTTCAGCTCTGGTTTGAAAGGTGTTGCAAGGAGCATGCCCACCTCAGCTGCCCTTGATG 1083
Query 1295 TCGTTGCAAAAAACTTGGGTTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATTCTTT- 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1084 TCGTTGCAAAAAACTTGGGTTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATT-TTTC 1142
Query 1354 GGCAATCTAATGGATGCTGGGATGTGCTCTGTATGCGGAGAAGAAAGTTTTGGAACCGGT 1413
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1143 GGCAATCTAATGGATGCTGGGATGTGCTCTGTATGCGGAGAAGAAAGCTTTGGAACTGGT 1202
Query 1414 TCGGATCATATCCGTGAGAAAGATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCGGATCATATCCGTGAGAAAGATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTG 1262
Query 1474 GCTCACAAGAACAAGGAAACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATT 1533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GCTCACAAGAACAAGGAAACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATC 1322
Query 1534 GTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGAAC 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGAAC 1382
Query 1594 GTAGACGCAACTGCAGCTAAAGAACTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTT 1653
||||| |||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1383 GTAGATGCAACTAAAGCTAAAGAACTCATGGGGCTCTTGGTTAAGTTGCAATCTTCACTT 1442
Query 1654 CCCGAAGTCAACAAGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCA 1713
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1443 CCTGAAGTCAACAAGATTATAAAGGGAATTCATCCGGAGGTTGCAAATGTTGCAAGCGCA 1502
Query 1714 GATGAGTTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGATCCGA 1773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 GATGAATTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGATCCGA 1562
Query 1774 TACTTATTCGAGGATGGATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGA 1833
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TACTTATTCGAAGATGGATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGA 1622
Query 1834 GCAACAATAAGGCTATACATTGAACAATACGAGAAGGACGCCTCAAAGATCGGCCGAGAT 1893
|||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||
Sbjct 1623 GCAACAATAAGGCTCTACATTGAACAGTATGAAAAGGACGCCTCAAAGATTGGCCGAGAT 1682
Query 1894 TCTCAGGATGCTCTTGGTCCCCTGGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAG 1953
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1683 TCTCAGGATGCTCTTGCTCCTTTGGTTGATGTTGCTTTAAAGCTGTCGAAAATGCAAGAG 1742
Query 1954 TTCACCGGCCGATCATCACCAACTGTTATTACATAA 1989
||||||||||||||||||||||||||||||||||||
Sbjct 1743 TTCACCGGCCGATCATCACCAACTGTTATTACATAA 1778
> Ahg472576 jgi|Araly1|472576|fgenesh2_kg.1__2530__AT1G23190.1
Length=2087
Score = 1921 bits (1040), Expect = 0.0
Identities = 1529/1764 (87%), Gaps = 37/1764 (2%)
Strand=Plus/Plus
Query 241 TTCAAGGTCTCT-CTCGTCTCTACTTCGCCTATTGATGGCCAGAAACCTGGGACTTCTGG 299
|||||||| ||| | ||| || || || |||||||||||||||||||| || ||||||||
Sbjct 40 TTCAAGGTTTCTAC-CGTTTCAACATCTCCTATTGATGGCCAGAAACCAGGAACTTCTGG 98
Query 300 ACTCCGTAAGAAGGTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGC 359
||||||||||||||||||||||| |||||||| ||||| || || |||||||| || ||
Sbjct 99 TCTCCGTAAGAAGGTGAAAGTGTTCAAGCAACCCAATTATCTAGAGAATTTTGTGCAAGC 158
Query 360 AACGTTCAATGCTCTTACTACAG-AGAAAGTTAAAGGTGCGACACTTGTGGTTTCTGGTG 418
||| |||||||||||||| | | |||| ||||||||||| || |||||||| || ||||
Sbjct 159 AACATTCAATGCTCTTACGGC-GCAGAAGGTTAAAGGTGCCACTCTTGTGGTCTCCGGTG 217
Query 419 ATGGTCGTTATTATTCAGAGCAAGCTATTCAGATTATAGTAAAGATGGCAGCAGCTAATG 478
||||||||||||||||| || | ||| ||||||| ||| | |||||||||||||||||||
Sbjct 218 ATGGTCGTTATTATTCAAAGGATGCTGTTCAGATCATAATTAAGATGGCAGCAGCTAATG 277
Query 479 GTGTTA--GACGTGTGTGGGTTGGTCAAAACAGTCTGCTATCAACTCCTGCAGTATCAGC 536
||| || || |||||||||||||| |||||| |||| ||||||||||||| ||||||||
Sbjct 278 GTG-TACGGA-GTGTGTGGGTTGGTAAAAACACTCTGTTATCAACTCCTGCTGTATCAGC 335
Query 537 TATTATTCGTGAAAGAGT-AGGGGCTGATGGATCTAAAGCCACAGGAGCATTTATCTTAA 595
| | |||||||||||| | ||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 336 TGTGATTCGTGAAAGA-TCAGGGGCTGATGGATCGAAAGCAACTGGAGCCTTTATCTTAA 394
Query 596 CAGCAAGTCATAATCCTGGTGGCCCAACTGAGGATTTCGGAATTAAGTACAATATGGAAA 655
|||||||||| |||||||||||||| ||||||||||| ||||| || |||||||||||||
Sbjct 395 CAGCAAGTCACAATCCTGGTGGCCCTACTGAGGATTTTGGAATCAAATACAATATGGAAA 454
Query 656 ATGGTGGACCAGCTCCTGAATCAATCACTGATAAGATTTACGAGAACACAAAGACAATCA 715
| || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 455 ACGGAGGACCTGCTCCTGAATCAATCACTGATAAAATTTACGAGAACACTAAGACAATCA 514
Query 716 AGGAGTACCCAATAGCGGAAGATCTACCCAGGGTTGATATTTCTACTATTGGTATAACCA 775
|||||||||||||||| || |||||||||| |||||||||||||| || ||| |||| |
Sbjct 515 AGGAGTACCCAATAGCAGACGATCTACCCAATGTTGATATTTCTACCATCGGTGTAACTA 574
Query 776 GCTTTGAAGGACCTGAAGG-AAAGTTTGACGTCGAAGTTTTTGATTCTGCAGATGACTAT 834
|||||||||||||||| || ||| ||||| || |||||||| || ||||||||||||||
Sbjct 575 GCTTTGAAGGACCTGATGGCAAA-TTTGATGTTGAAGTTTTCGACTCTGCAGATGACTAC 633
Query 835 GTTAAACTAATGAAGTCAATCTTCGACTTTGAATCCATCAAGAAATTGCTATCTTATCCA 894
|||||| | ||||||||||||||||| |||||||| ||| ||||||||| || | ||||
Sbjct 634 GTTAAATTGATGAAGTCAATCTTCGATTTTGAATCAATCCGGAAATTGCTTTCATCTCCA 693
Query 895 AAATTTACTTTCTGCTATGATGCATTGCATGGAGTGGCTGGAGCATATGCACATCGCATC 954
|| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 694 AAGTTTACATTCTGCTATGATGCATTGCATGGAGTTGCTGGAGCCTATGCACATCGCATT 753
Query 955 TTTGTCGAAGAACTAGGTGCACCAGAAAGTTCGTTGTTGAACTGCGTACCCAAGGAGGAC 1014
|||||||||||||| ||||| | |||||| | || ||||||||| |||||||||||||
Sbjct 754 TTTGTCGAAGAACTCGGTGCGCAAGAAAGCGCATTATTGAACTGCACACCCAAGGAGGAC 813
Query 1015 TTTGGAGG-GGGCCACCCGGATCCCAATCTT-ACCTATGCTAAGGAGCTCGTGGCACGCA 1072
|||||||| ||| || |||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 814 TTTGGAGGAGGG-CATCCGGATCCCAAT-TTGACCTATGCTAAGGAGCTTGTGGCACGAA 871
Query 1073 TGGGATTGAGTAAAACTGATGATGCTGGTGGCGAGCCTCCAGAGTTTGGCGCCGCTGCTG 1132
||||| | |||||| | || | |||| || || |||||||||||||||||||||||||
Sbjct 872 TGGGACTAAGTAAATCCGA-CA--CTGGAGGTGAACCTCCAGAGTTTGGCGCCGCTGCTG 928
Query 1133 ATGGTGATGCAGACCGAAACATGATCCTCGGTAAAAGGTTTTTCGTAACTCCTTCGGATT 1192
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 929 ATGGTGATGCAGACCGTAACATGATCCTTGGTAAAAGGTTTTTTGTAACTCCTTCAGATT 988
Query 1193 CAGTTGCTATAATTGCTGCAAATGCTGTTGGGGCCATACCATACTTCAGCTCTGGTTTAA 1252
||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||| |
Sbjct 989 CAGTTGCCATAATTGCTGCAAATGCTATTGGGGCCATTCCGTACTTCAGCTCTGGTTTGA 1048
Query 1253 AAGGTGTTGCTAGGAGCATGCCGACCTCAGCTGCACTTGATGTCGTTGCAAAAAACTTGG 1312
|||||||||||||||| ||||| ||||||||||| || |||||||||||||||| ||||
Sbjct 1049 AAGGTGTTGCTAGGAGTATGCCCACCTCAGCTGCTCTCGATGTCGTTGCAAAAAGCTTGA 1108
Query 1313 GTTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAATTCTTTGGCAATCTAATGGATGCTG 1372
||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||
Sbjct 1109 ATTTGAAGTTCTTTGAGGTTCCAACAGGCTGGAAGTTTTTTGGTAATCTGATGGATGCTG 1168
Query 1373 GGATGTGCTCTGTATGCGGAGAAGAAAGTTTTGGAACCGGTTCGGATCATATCCGTGAGA 1432
||||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1169 GGATGTGTTCTGTTTGTGGGGAAGAAAGTTTTGGAACCGGCTCGGATCATATCCGCGAGA 1228
Query 1433 AAGATGGGATCTGGGCAGTTCTTGCTTGGCTATCAATACTGGCTCACAAGAACAAGG-AA 1491
|||| ||||| |||||||||||||| ||| | || ||||| |||||||||||||||| ||
Sbjct 1229 AAGACGGGATTTGGGCAGTTCTTGCGTGGATGTCCATACTTGCTCACAAGAACAAGGGAA 1288
Query 1492 ACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCT 1551
| |||| || ||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1289 ATA-TTGACGGTAATGCTAAACTGGTGTCGGTTGAAGACATTGTCCGCCAGCATTGGGCT 1347
Query 1552 ACATATGGCCGTCACTATTACACTCGATACGACTATGAGAACGTAGACGCAACTGCAGCT 1611
|| || |||||||||||||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 1348 ACCTACGGCCGTCACTATTACACTCGTTACGACTATGAGAATGTAGACGCAGGTAAAGCT 1407
Query 1612 AAAGAACTCATGG-GACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAGAT 1670
|| ||||| |||| | | |||||| || |||||||||||| |||| ||||| ||||||||
Sbjct 1408 AAGGAACTGATGGAG-CATTTGGTCAAATTGCAATCTTCAATTCCTGAAGTTAACAAGAT 1466
Query 1671 TAT-AAAGGGAATTCAT-CCAGAGGTGGCAAATGTTGCAAGCGCAGATGAGTTCGAGTAC 1728
| | ||||| ||||| | || || ||||| || || || | || ||||| |||||||||
Sbjct 1467 TGTGAAAGG-AATTCGTTCC-GATGTGGCGAACGTCGCCGGTGCCGATGAATTCGAGTAC 1524
Query 1729 AAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGGA-TCCGATACTTATTCGAGGA 1787
||||||||||| ||||| || |||| |||||||| |||| |||| ||||| || || ||
Sbjct 1525 AAAGATCCAGTTGATGGATCCATTTCGAAGCACCA-GGGAATCCGTTACTTGTTTGAAGA 1583
Query 1788 TGGATCACGACTTGTGTTCCGTCTCTCGGGAACTGGCTCAGAAGGAGCAACAATAAGGCT 1847
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1584 CGGATCACGACTTGTTTTCCGTCTCTCTGGAACTGGCTCAGAAGGAGCAACCATCAGGCT 1643
Query 1848 ATACATTGAACAATACGAGAAGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCT 1907
||||||||||| ||||||||||| || ||||| | ||||||||| || ||||| ||| |
Sbjct 1644 CTACATTGAACAGTACGAGAAGGATGCTTCAAAAACCGGCCGAGAATCCCAGGAAGCT-T 1702
Query 1908 TGGTC-CC-CTGGTTGATGTT-GCAT-TAAAGCTGTCGAAAATGCAAGAGTTCACCGGCC 1963
|| || || |||||||| || || | |||||||||| || ||| | |||||||||||||
Sbjct 1703 TG-TCTCCTCTGGTTGAC-TTAGC-TCTAAAGCTGTCTAAGATGGAGGAGTTCACCGGCC 1759
Query 1964 GATCATCACCAACTGTTATTACAT 1987
||||| | ||||| || || ||||
Sbjct 1760 GATCAGCCCCAACCGTCATAACAT 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74771150935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5