BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70760.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926407 jgi|Araly1|926407|scaffold_201968.1 911 0.0
Ahg476207 jgi|Araly1|476207|fgenesh2_kg.2__1337__AT1G70770.1 230 2e-59
> Ahg926407 jgi|Araly1|926407|scaffold_201968.1
Length=617
Score = 911 bits (493), Expect = 0.0
Identities = 578/619 (93%), Gaps = 5/619 (1%)
Strand=Plus/Plus
Query 19 GAACA-ACAGACACATAGAGATGAGCCGGTGCGGCTCTCTTGGGCTCTATGCCCCAAATG 77
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1 GAACAGACAGAAACATAGAGATGAGCCGTTGCGGCTCTCTTGGGCTCTATGCCCCGAATG 60
Query 78 CTTTGCCATCTCTCTCCTTGAAGCCACGCAGTGTCAAATCTCCTTTCTGTATTACATCTC 137
||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct 61 CTTTGCCATCTCTCTCCTTGAAGCCTCGCAGTGTGAAATCTCCTCTCTGTGTTACATCTT 120
Query 138 ACACCAAACCCAACGACACTCTTCTTCATAATGTTAACAAGATGAGAGCAAAGGCCTGTG 197
|| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 121 ACTCCAAACCAAACGATACTCTTCTTCATAATGTTGCCAAGATGAGAGCAAAGGCCGGTG 180
Query 198 ATATACTTGGAGCAAAGAAGACAATCTTGGCAGCTCAACTCGGGGCAGTTCTTGCCACGA 257
|| || |||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTATTTGGAGAAAAGAAGACAGTTTTGGCAGCTCAACTCGGGGCAGTTCTTGCCACGA 240
Query 258 TTGACCATCCAGCCTTAGCAATAACAGGAGTTAACAACCAGCAGGAATTGAGCAGTGTTG 317
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TTGATCATCCGGCGTTAGCAATAACAGGAGTCAACAACCAGCAGGAATTGAGCAGTGTTG 300
Query 318 TGCTCGATATCGGGATCATATCCGTTTGGTACTTCCTAGTAATGCCACCAATCATCATGA 377
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TGCTCGATATCGGGATCATATCCGTTTGGTACTTCCTCGTAATGCCACCAATCATCATGA 360
Query 378 ACTGGCTAAGAGTAAGATGGTACAGAAGGAAGTTCTTCGAGATGTATTTACAGTTCATGT 437
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ACTGGCTGAGAGTAAGATGGTACAGAAGGAAGTTCTTCGAGATGTATTTGCAGTTCATGT 420
Query 438 TCGTCTTCATGTTCTTCCCCGGGCTACTGTTATGGGCACCATTTCTCAACTTCAGGAAGT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TCGTCTTCATGTTCTTCCCCGGGCTACTGTTATGGGCACCATTTCTCAACTTCAGAAAGT 480
Query 498 TCCCAAGAGATCC-TAATATGAAGAATCCTTGGGACAAACCAACAGACCCAGACTCTATA 556
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCCCAAGAGATCCATC-TATGAAGAATCCTTGGGACAAACCAACAGACCCAGACTCTATT 539
Query 557 AAGAACGTTTACCTCAAATACCCATAT-GCGACGCCAGAAGATTACGATCTCGATTAACA 615
|||||| |||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 540 AAGAACAACTACCTCAAATACCCAT-TCGCAACGCCAGAAGATTACGATCTCGATTAACC 598
Query 616 GATAGATCCACAAGTCTGT 634
||||||| ||||||| |||
Sbjct 599 GATAGATTCACAAGTTTGT 617
> Ahg476207 jgi|Araly1|476207|fgenesh2_kg.2__1337__AT1G70770.1
Length=2321
Score = 230 bits (124), Expect = 2e-59
Identities = 144/153 (94%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 647 GACTGTATGTATATACTCTGCATTCACATGAACACAATGTAATGGCTTGTGCATACACTT 706
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 2321 GACTGTATGTATATACTCTGGATTCACATGAACACAATGTAATGACTTGTGCATACAGTT 2262
Query 707 ATGTTCAAGAGAAATCCAAATCAAA-CATGTAATAAACAGAAATAACTTTATTGTCATCA 765
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2261 ATGTTCAAGATAAATCCAAATCAAAACATATAATAAACAGAAATAACTTTATTGTCATCA 2202
Query 766 GGG-AAAAAAGAAGAA-ATATAAATTATCTCAG 796
||| |||||||||||| | ||||||||||||||
Sbjct 2201 GGGGAAAAAAGAAGAAGAAATAAATTATCTCAG 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5