BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70782.1 Length=1136 Score E Sequences producing significant alignments: (Bits) Value Ahg926409 jgi|Araly1|926409|scaffold_201970.1 728 0.0 Ahg926410 jgi|Araly1|926410|scaffold_201971.1 309 3e-83 Ahg921353 jgi|Araly1|921353|scaffold_102634.1 191 1e-47 > Ahg926409 jgi|Araly1|926409|scaffold_201970.1 Length=463 Score = 728 bits (394), Expect = 0.0 Identities = 434/453 (96%), Gaps = 3/453 (1%) Strand=Plus/Plus Query 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71 Query 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131 Query 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191 Query 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251 Query 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708 |||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | ||| Sbjct 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311 Query 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768 ||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371 Query 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431 Query 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860 |||||||||||||||| | ||||||||||||| Sbjct 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463 > Ahg926410 jgi|Araly1|926410|scaffold_201971.1 Length=193 Score = 309 bits (167), Expect = 3e-83 Identities = 181/187 (97%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 131 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTACGCTCTCCC 190 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTTCGCTCTCCC 63 Query 191 TTTCCATCAAAAGGGCGAGC-TTTTCTCTTCCTCTCTCGACATCCTCTGTTTTCGCTTTC 249 |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 64 TTTCCATCAAAAGGGCGAGCTTTTTC-CTTCCTCTCTTGACATCCTCTGTTTTCGCTTTC 122 Query 250 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCGC 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 123 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCAC 182 Query 310 CCCTAAA 316 ||| ||| Sbjct 183 CCC-AAA 188 > Ahg921353 jgi|Araly1|921353|scaffold_102634.1 Length=197 Score = 191 bits (103), Expect = 1e-47 Identities = 156/180 (87%), Gaps = 10/180 (6%) Strand=Plus/Plus Query 127 CTCCGTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGT-TTACGCT 185 ||||| ||| | ||||||||||||||||||||||||||||| |||| ||| | ||| ||| Sbjct 4 CTCCG-GTG-A-CGTTTGTGAATGGTGGAAACTAATCCGATAGGTGATAA-TCTTAAGCT 59 Query 186 CTCCCTTTCCATCAA-AAGGGCGAGCTTTT-C-TCTTCC-TCTCTCGACATCCTCTGTTT 241 | ||||||| | ||| |||||||||||||| | || ||| |||||| || |||||||| Sbjct 60 CACCCTTTCAA-CAACAAGGGCGAGCTTTTACATCATCCCTCTCTCTTCAGACTCTGTTT 118 Query 242 TCGCTTTCGGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAA 301 |||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| Sbjct 119 TCGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAA 178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42354560787 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5