BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70800.1 Length=717 Score E Sequences producing significant alignments: (Bits) Value Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102 760 0.0 Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103 549 1e-155 > Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102 Length=525 Score = 760 bits (411), Expect = 0.0 Identities = 490/528 (93%), Gaps = 6/528 (1%) Strand=Plus/Plus Query 53 ATGGAGAAAACAGAGGAAGAGGTTGAGATGAAGGAACTGGTAGGGCTTGTGAGAATCCTA 112 ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| | Sbjct 1 ATGGAGAAACCAGAGGAAGAAGTTGAGATTAAGGAACTGGTAGGGCTTGTGAGAATCCAA 60 Query 113 GTGAAGAGAGGGATCGATCTTGCTCGTCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTC 172 ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct 61 GTGAAGAGAGGGATCAATCTTGCTCGTCGAGACGCTTTTAGCAGCGACCCTTTTGTCGTC 120 Query 173 ATAACCATGGG-TCCACAGAAGCTGAAATCTTTTACTGTGAAGAATAACTGCAACCCAGA 231 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 ATAACCATGGGAT-CACAGAAGCTGAAATCTTTTACTGTGAAAAATAACTGCAACCCAGA 179 Query 232 GTGGAACGAAGAGTTGACTCTTGCGATCGAAGATCCCAATGAACCTGTGAAGCTGATGGT 291 |||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||| Sbjct 180 GTGGAACGAAGAGTTGACCCTTGCGATTGAAAATCCCAATGAACCTGTGAATCTGATGGT 239 Query 292 GTATGATAAAGATACATTTACAGCGGACGACAAGATGGGAGATGCGCAGATAGATATGAA 351 |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 240 GTATGATAAAGATACATTTACATCAGACGACAAGATGGGAGATGCGGAGATAGATATGAA 299 Query 352 ACCGTTCCTAGACG-TTCACAAACTCGGTTTGAAAGAACTTCCACATGGAAAAGAGCTCA 410 |||||||||||| | |||||||| | |||||| || |||||||| | |||| |||| ||| Sbjct 300 ACCGTTCCTAGA-GATTCACAAAATGGGTTTGCAACAACTTCCAGACGGAACAGAGATCA 358 Query 411 AGAGAATTGTGCCCACCAGAGATAACTGCTTGTCTGAAGATAGCATAATCGTCTCCGATA 470 |||||||||| || |||||||| ||||||||| |||||||||||| |||||||| |||| Sbjct 359 AGAGAATTGTACCAACCAGAGACAACTGCTTGGCTGAAGATAGCAGAATCGTCTATGATA 418 Query 471 ATGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCG 530 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 419 ACGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGATCG 478 Query 531 AGATCCAGCTTGAATGGCTTAAAAA-TCCAGGTGGTAGTGGACTCTGA 577 ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 479 AGATCCAGCTTGAATGG-TTAAAAAATCCAGGTGGTAGTGGACTCTGA 525 > Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103 Length=498 Score = 549 bits (297), Expect = 1e-155 Identities = 429/491 (87%), Gaps = 16/491 (3%) Strand=Plus/Plus Query 80 ATGAAGGAACTGGTAGGGCTTGTGAGAATCCTAGTGAAGAGAGGGATCGATCTTGCTC-G 138 ||| ||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||| | Sbjct 1 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 60 Query 139 TCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGG-TCCACAGAAGCTGA 197 |||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||||| Sbjct 61 -CGAGACACTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGGAT-CACATAAGCTGA 118 Query 198 A-ATCTTTTACTGT-GAAGAATAACTGCAACCCAGAGTGGAACGAAGAGTTGACTCTTGC 255 | | | |||||| ||| |||||||||||||| ||||||||||| || || || ||||| Sbjct 119 AGA-CGCGTACTGTGGAA-AATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGC 176 Query 256 GATCGAAGATCCCAATGAACCTGTGAAGCTGATGGTGTATGATAAAGATACATTTACAGC 315 | | || ||||| ||||||||||||| ||||| |||||||||||||||||||| ||| | Sbjct 177 GGTAAAACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATC 236 Query 316 GGACGACAAGATGGGAGATGCGCAGATAGATATGAAACCGTTCCTAGACGTTCACAAACT 375 | ||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||| | Sbjct 237 GCACGACAAGATGGGAGATGCAAAGATAGATATCAAACCATTCCTAGAGGTTCACAAAAT 296 Query 376 CGG-TTTGAAAGAACTTCCACATGGAAAAGAGCTCAAGAGAATTGTGCCCACCAGAGAT- 433 || |||| ||||||||||| |||||| |||| |||||||| ||||||||||||||| | Sbjct 297 -GGATTTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCACCAGAG-TC 354 Query 434 AACTGCTTGTCTGAAG-ATAGCA-TAATCGTCTCCGATAATGGCAAGATCGTTCAGGACA 491 || || || ||||||| | |||| | ||||||||| |||||||||| ||||||||||||| Sbjct 355 AATTGTTTATCTGAAGCA-AGCAGT-ATCGTCTCCAATAATGGCAAAATCGTTCAGGACA 412 Query 492 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCGAGATCCAGCTTGAATGGCTTA 551 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || Sbjct 413 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCGAGGTCGAGATTCAGCTTGAATGGATTG 472 Query 552 AAAATCCAGGT 562 ||| ||||||| Sbjct 473 AAATTCCAGGT 483 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26381058564 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5