BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70940.1
Length=2563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908693 jgi|Araly1|908693|Al_scaffold_0002_1774 2998 0.0
Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1 534 1e-150
> Ahg908693 jgi|Araly1|908693|Al_scaffold_0002_1774
Length=1929
Score = 2998 bits (1623), Expect = 0.0
Identities = 1831/1932 (95%), Gaps = 12/1932 (1%)
Strand=Plus/Plus
Query 117 ATGATCTCATGGCACGACCTCTACACGGTCCTCACCGCCGTGATTCCTCTCTACGTGGCC 176
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGATCTCATGGCACGACCTCTATACGGTCCTCACCGCCGTGATTCCTCTCTACGTCGCC 60
Query 177 ATGATCCTCGCTTACGGCTCTGTCCGGTGGTGGAAAATCTTCTCACCCGACCAATGCTCC 236
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATGATCCTCGCTTACGGCTCTGTCCGGTGGTGGAAGATCTTCTCACCCGACCAATGCTCC 120
Query 237 GGAATCAACCGTTTTGTCGCCATCTTCGCCGTCCCTCTCCTCTCTTTTCACTTCATCTCC 296
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGAATCAACCGTTTTGTTGCCATCTTCGCCGTCCCTCTCCTCTCTTTCCACTTCATCTCC 180
Query 297 ACCAACAATCCTTACGCAATGAATCTCCGGTTCATCGCCGCCGACACTCTCCAAAAAATC 356
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTAACAATCCTTACGCCATGAATCTCCGGTTCATCGCCGCCGACACTCTCCAAAAAATC 240
Query 357 ATCATGTTGTCACTTTTAGTCCTATGGGCTAATTTCACTCGCTCCGGTAGCCTCGAGTGG 416
||||||||||| ||||| ||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 241 ATCATGTTGTCCCTTTTGGTCCTCTGGGCTAATCTCACCCGCTCCGGTAGCCTCGAGTGG 300
Query 417 AGCATCACAATCTTTTCCCTCTCCACACTTCCCAACACTCTTGTTATGGGGATTCCTCTC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCATCACAATCTTTTCCCTCTCCACACTTCCCAACACTCTTGTTATGGGGATTCCTCTC 360
Query 477 TTGATCGCCATGTATGGCGAATACTCTGGTTCCCTCATGGTCCAAATCGTCGTCCTCCAG 536
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTGATCGCCATGTACGGCGAATACTCTGGTTCCCTCATGGTCCAAATCGTTGTCCTCCAG 420
Query 537 TGTATCATCTGGTACACGCTTCTCCTTTTTCTCTTCGAGTTTCGTGGCGCCAAGATGCTC 596
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 421 TGTATCATCTGGTACACGCTTCTCCTTTTTCTTTTCGAGTTTCGCGGCGCCAAGATGCTT 480
Query 597 ATCATGGAGCAGTTCCCTGAGACGGCTGCTTCCATTGTTTCTTTCAAAGTCGAATCCGAC 656
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 481 ATCATGGAGCAGTTCCCGGAAACAGCTGCCTCCATTGTTTCTTTCAAAGTCGAATCCGAC 540
Query 657 GTCGTTTCGCTCGACGGCCATGATTTTCTTGAGACCGATGCAGAGATAGGTGACGACGGG 716
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 541 GTCGTTTCGCTTGACGGCCATGATTTTCTTGAAACCGATGCAGAGATTGGTGACGACGGG 600
Query 717 AAGCTTCACGTCACCGTGAGAAAATCCAACGCTTCACGTCGTTCGTTCTGCGGCCCGAAC 776
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 601 AAGCTTCACGTCACCGTGAGAAAATCCAACGCATCACGTCGTTCATTTTGCGGCCCCAAC 660
Query 777 ATGACTCCACGGCCGTCAAATCTCACCGGAGCTGAGATTTATAGTCTCAGCACCACTCCT 836
||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 661 ATGACACCACGGCCGTCAAATCTCACCGGAGCTGAGATTTACAGCCTAAGCACCACTCCA 720
Query 837 AGAGGCTCTAATTTCAACCACTCTGATTTTTACAACATGATGGGTTTCCCCGGTGGTCGT 896
|||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||
Sbjct 721 AGAGGCTCTAATTTTAACCACTCTGATTTTTACTCCATGATGGGTTTCCCCGGCGGCCGT 780
Query 897 CTCTCCAATTTCGGTCCGGCGGATATGTACTCCGTTCAATCATCTAGAGGTCCAACTCCT 956
||||||||||| |||||||| ||||||||||| |||||||| || || || || ||||||
Sbjct 781 CTCTCCAATTTTGGTCCGGCCGATATGTACTCTGTTCAATCTTCAAGGGGCCCCACTCCT 840
Query 957 CGACCTTCAAACTTCGAGGAGAATTGCGCCATGGCATCCTCCCCGAGATTCGGGTATTAC 1016
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 841 CGACCTTCAAACTTCGAGGAGAATTGCGCGATGGCATCCTCCCCGAGATTTGGATATTAC 900
Query 1017 CCTGGAGGAGGAGCCGGGTCTTATCCGGCTCCGAATCCAGAGTTCTCTTCAACCACCACA 1076
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 CCTGGAGGAGGAGCCGGGTCTTATCCGGCTCCGAATCCAGAGTTCTCCTCAACCACCACA 960
Query 1077 TCTACCGCCAATAAAAGCGTCAATAAAAACCCGAAAGACGTTAATACGAATCAGCAGACG 1136
|| |||||||||||| ||||||||||||||| ||||||||| | |||||||||||| |||
Sbjct 961 TCCACCGCCAATAAAGGCGTCAATAAAAACCTGAAAGACGTCACTACGAATCAGCAAACG 1020
Query 1137 ACTCTTCCAACGGGCGGCAAGTCAAACAGCCATGACGCCAAGGAGCTTCACATGTTCGTC 1196
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 ACTCTTCCAACGGCCGGCAAGTCAAACAGCCATGACGCCAAGGAGCTTCACATGTTTGTC 1080
Query 1197 TGGAGCTCAAACGGGTCACCCGTTTCAGACCGGGCGGGTCTTAACGTTTTCGGCGGAGCA 1256
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 TGGAGCTCCAACGGGTCACCCGTTTCAGACCGCGCGGGTCTTAACGTTTTCGGCGGAGCG 1140
Query 1257 CCTGACAACGATCAAGGCGGAAGATCTGACCAAGGTGCTAAAGAGATCCGTATGTTAGTC 1316
|| |||||||| |||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1141 CCCGACAACGAACAAGGCGGAAGATCCGATCAAGGTGCCAAAGAGATCCGTATGTTAGTC 1200
Query 1317 CCAGATCAATCTCACAACGGCGAGACCAAAGCTGTAGCTCATCCAGCAAGTGGAGATTTC 1376
|| |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||
Sbjct 1201 CCTGATCAATCTCACAACGGCGAGAGCAAGGCTCTAGCTCATCCAGCGAGTGGAGATTTC 1260
Query 1377 GGAGGAGAACAACAATTTAGTTTCGCCGGAAAAGAAGAAGAAGCAGAGAGACCAAAAGAC 1436
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1261 GGAGGCGAACAACAATTTAGTTTCGCCGAAAAAGAAGAAGAAGGAGAGAGACCAAAAGAC 1320
Query 1437 GCCGAGAATGGTCTAAACAAACTTGCTCCAAATTCCACGGCGGCGCTACAATCCAAGACA 1496
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1321 GCCGAGAATGGTCTAAACAAACTCGCTCCAAATTCCACGGCAT---TACAATCAAAGACA 1377
Query 1497 GGTCT--A-GGAG--G----AGCCGAAGCAAGTCAACGAAAAAATATGCCTCCGGCGAGT 1547
||||| | |||| | || ||||||||||||||||||||||||||| ||||| ||
Sbjct 1378 GGTCTCGAAGGAGCCGCCGGAGGCGAAGCAAGTCAACGAAAAAATATGCCGCCGGCTAGC 1437
Query 1548 GTGATGACAAGGCTGATACTGATAATGGTTTGGAGGAAACTCATCAGAAACCCAAACACT 1607
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1438 GTGATGACAAGGCTGATACTGATAATGGTGTGGAGGAAACTCATCAGAAACCCAAACACT 1497
Query 1608 TACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGCTTTCCGGTGGCACGTGGCAATG 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGCTTTCCGGTGGCACGTGGCAATG 1557
Query 1668 CCCAAAATCATTCAACAATCTATCTCCATTCTATCTGATGCTGGTCTTGGAATGGCAATG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CCCAAAATCATTCAACAATCTATCTCCATTCTATCTGATGCTGGTCTTGGAATGGCAATG 1617
Query 1728 TTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATTAATCGCTTGTGGGAATTCAGTG 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1618 TTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATTAATCGCTTGTGGGAACTCCGTG 1677
Query 1788 GCAACGTTTGCCATGGCGGTTAGGTTCCTTACGGGTCCGGCCGTGATGGCGGTTGCTGCT 1847
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1678 GCAACGTTTGCGATGGCGGTTAGATTCCTTACGGGTCCGGCCGTGATGGCGGTTGCTGCT 1737
Query 1848 ATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCT 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 ATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCT 1797
Query 1908 CAAGGAATTGTGCCCTTTGTGTTTGCGAAGGAGTACAATGTTCATCCTGCTATTTTAAGT 1967
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1798 CAAGGAATTGTGCCCTTTGTGTTTGCAAAGGAGTACAATGTTCATCCTGCTATTTTAAGT 1857
Query 1968 ACAGGGGTAATATTTGGAATGCTTATAGCGCTTCCGATCACGCTGGTTTACTACATTCTA 2027
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ACAGGGGTAATATTCGGAATGCTTATAGCGCTTCCGATCACGCTGGTTTACTACATTCTA 1917
Query 2028 CTCGGGTTATAA 2039
||||||||||||
Sbjct 1918 CTCGGGTTATAA 1929
> Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1
Length=2198
Score = 534 bits (289), Expect = 1e-150
Identities = 442/518 (85%), Gaps = 2/518 (0%)
Strand=Plus/Plus
Query 1526 AAAAAATATGCCTCCGGCGAGTGTGATGACAAGGCTGATACTGATAATGGTTTGGAGGAA 1585
|||| ||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1493 AAAACATATGCCGCCGGCAAGTGTGATGACTCGGCTGATATTGATAATGGTGTGGAGGAA 1552
Query 1586 ACTCATCAGAAACCCAAACACTTACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGC 1645
||| || || ||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1553 ACTGATAAGGAACCCAAACACTTACTCTAGTCTCATTGGTCTGATTTGGGCTCTTGTCGC 1612
Query 1646 TTTCCGGTGGCACGTGGCAATGCCCAAAATCATTCAACAATCTATCTCCATTCTATCTGA 1705
||| ||||| | ||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1613 GTTCAGGTGGGATGTGGCAATGCCTAAAATCATTCAACAATCAATCTCAATTCTTTCTGA 1672
Query 1706 TGCTGGTCTTGGAATGGCAATGTTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATT 1765
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1673 TGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGCAACCTAAATT 1732
Query 1766 AATCGCTTGTGGGAATTC-AGTGGCAACGTTTGCCATGGCGGTTAGGTTCCTTACGGGTC 1824
||| |||||||| |||| | ||| || ||||| |||||||| || ||| |||| || |
Sbjct 1733 AATTGCTTGTGGAAATTTGAC-GGCCACTTTTGCAATGGCGGTGAGATTCTTTACTGGAC 1791
Query 1825 CGGCCGTGATGGCGGTTGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCG 1884
| || |||||||| || || || || || |||||||||||||| || || ||||||| |
Sbjct 1792 CAGCGGTGATGGCCGTAGCAGCAATGGCTATCGGATTACGTGGAGACCTATTGCGTGTGG 1851
Query 1885 CTATAGTTCAGGCCGCATTACCTCAAGGAATTGTGCCCTTTGTGTTTGCGAAGGAGTACA 1944
| || ||||| || ||||| |||||||| || ||||| ||||||||||| || ||||| |
Sbjct 1852 CCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAAGAGTATA 1911
Query 1945 ATGTTCATCCTGCTATTTTAAGTACAGGGGTAATATTTGGAATGCTTATAGCGCTTCCGA 2004
| |||||||| || || || ||||||||||||||||| ||||||||||| || || ||||
Sbjct 1912 ACGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTCGGAATGCTTATCGCACTACCGA 1971
Query 2005 TCACGCTGGTTTACTACATTCTACTCGGGTTATAAGCT 2042
|||| || |||||||||||| |||||||| ||||||||
Sbjct 1972 TCACACTTGTTTACTACATTTTACTCGGGCTATAAGCT 2009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96634951565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5