BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70985.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476228 jgi|Araly1|476228|fgenesh2_kg.2__1358__AT1G70985.1 837 0.0
> Ahg476228 jgi|Araly1|476228|fgenesh2_kg.2__1358__AT1G70985.1
Length=561
Score = 837 bits (453), Expect = 0.0
Identities = 528/564 (94%), Gaps = 5/564 (1%)
Strand=Plus/Plus
Query 1 AGACTCAAGAAGAAAGAAAGTCTCGAAAATCTTCTCTCTTTCTCTTACACAAACATATAT 60
|||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 1 AGACTCAAGAAGAAAGAAAGTCTCTAAAAACTTC-CTCTTTCTCTTACACAAACATATAT 59
Query 61 TTTCTTGTTTACCATTAAACAAAATCTTTCATAAAAAA-TTGGCCATGAATAAACGTTAC 119
|||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 60 TTTCTTCTTTACCATTAAAC-AAATCTTTCATAAAAAATTTGGCCATGAGTAAACGTTAC 118
Query 120 GGTCACCTCATAAGTCTATTGTTCGTGTTTTCTCTTGTTATGTTCCCCTTCATAACAATA 179
|||||||||| |||||||||||||||||||| |||||| | |||||||||| ||| |||
Sbjct 119 GGTCACCTCAAAAGTCTATTGTTCGTGTTTTATCTTGTCAACTTCCCCTTCACAACCATA 178
Query 180 TCACAGACGCCATGTCCGTACCCTTGTAACCCGT-TGCCAATAGCCGGTACTGGCTCCAC 238
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 179 TCACAGACGCCATGTCCGTACCCTTGTTACCC-TCCACCAATAGCCGGTACTGGCTCCAC 237
Query 239 TCAACCGGCCGGTTATTATCCTCAACCGACCGGTTACTATCCTCCTCCATCGTCGAGTAA 298
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 TCAACCGGCCGGTTATTATCCTCAACCGACCGGTTACTATCCTCCCCCATCGTCGAGTAA 297
Query 299 TGTACCGAATTACCCTTCTCCACCTTATTACGGAGGTAATCCCAGCGGGGGATATAACGG 358
|||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 298 TGTACCAAATTACCCTTCTCCACCTTATTACGGAGGTAGTCCCGGCGGGGGATATAATGG 357
Query 359 TCCTCCACCGCCGGACCCTATCTTGCCTTATTTCCCGTTCTACTACAGAAAACCTCCTCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 TCCTCCACCGCCGGACCCTATCTTGCCTTATTTCCCGTTCTACTACAGAAAACTTCCTCA 417
Query 419 TCAGACGGATCAGTCATCATCTTCCATGAAATCAACTGTCAAGATCGTAACAGTGGCAAA 478
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 418 TCAGACGGATCAGTCATCATCTTCCGTGAAATCAACGGTCAAGATCGTAACGGTGGCAAA 477
Query 479 TCTTCTTGCGGTACTTATGTTATTTTCTTGGTAACGTTTTGTTTATGGGATAATTGTAAC 538
|||| |||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||
Sbjct 478 TCTTTTTGCGGTACTTATGTTTTTTTATTGGTAACGTTTTGTTTATGGTATAATTTTAAC 537
Query 539 TTTCTATGGTTGAAACTTTTATGT 562
||||| | ||||||||||| ||||
Sbjct 538 TTTCTGTAGTTGAAACTTTGATGT 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5