BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71030.1 Length=986 Score E Sequences producing significant alignments: (Bits) Value Ahg476235 jgi|Araly1|476235|fgenesh2_kg.2__1365__AT1G71030.1 1149 0.0 > Ahg476235 jgi|Araly1|476235|fgenesh2_kg.2__1365__AT1G71030.1 Length=907 Score = 1149 bits (622), Expect = 0.0 Identities = 827/920 (90%), Gaps = 37/920 (4%) Strand=Plus/Plus Query 1 TCAACCCACCAGTCCAAGTCAAACC----TCCTCAAGCCATCCCCTAATCCTATATATCA 56 ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 1 TCAACCCACCAGTCCAAGTCAAACCTATATCCTCTATCCATCCCCTAATCCTATATATCA 60 Query 57 GTTT-CTTCTCGCAAACCACCTCACAATCTATCAACAG-----TTTT---aaaaaaaGAC 107 |||| ||||||||||||||||||| |||| |||||||| |||| ||||||| || Sbjct 61 GTTTGCTTCTCGCAAACCACCTCATAATCAATCAACAGTTTTTTTTTAAAAAAAAAAAAC 120 Query 108 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAAACCCGCCTTCGTGCTCTCTC 167 ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| Sbjct 121 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAGAGCCGCCTCCGTGCTCTCTC 180 Query 168 CCCACCTTCCGGTATGCAACACCGT--AAG-AGATGTCGATTGAGAGGTCGAAACTACGT 224 || |||||||| |||||||||||| || ||||||||||||||||| |||||||| | Sbjct 181 TCCGCCTTCCGGAATGCAACACCGTGGTAGAAGATGTCGATTGAGAGGAAGAAACTACAT 240 Query 225 AAGGCCAGAAGTTAAACAACGCAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 284 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGGCCAGAAGTTAAACAAAACAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 300 Query 285 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGAAGATTGCCAGGACGAACCGA 344 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 301 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGCAGATTGCCTGGACGAACGGA 360 Query 345 CAACGAAGTTAGGATCCATTGGGAAACTTACCTAAAAAGGAAGCTCGTAAAAATGGGAAT 404 ||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| Sbjct 361 CAACGAAGTTAGGATCCATTGGGAAACTTACTTAAAGAGGAAGCTCATGAAAATGGGAAT 420 Query 405 CGACCCAACCAATCATCGTCTCCACCATCACACCAACTACATTTCTAGACG-TCACCTCC 463 ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| | ||||| Sbjct 421 CGACCCAACTAATCATCGTCTCCACCACCACACCAACTACATTTCGAGACGAT-ACCTCA 479 Query 464 ATTCTTCACATAAGGAACATGAAACCA-AGATTATTAGTGATCAATCTTCTTCGGTATCC 522 |||| |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||| Sbjct 480 ATTCCTCACGTAAGGAACATGAAAC-AGAGATTATTAGTGATCAATCTTCTTCAGTATCC 538 Query 523 GAATCATGTGGTGTAA---CAATTTTGCCCATTCCAAGTACCAATTGCTCGGAGGATAGT 579 ||||||| |||| ||| |||| || ||||||||||||||||||||||||||||||||| Sbjct 539 GAATCATCTGGTATAAGTACAATCTTACCCATTCCAAGTACCAATTGCTCGGAGGATAGT 598 Query 580 ACTAGTACCGGACGAAGTCATTTGCCTGACCTAAACATTGGTCTCATCCCGGCCGTGACT 639 |||||||||||||||||||||||||||||||| ||||| | ||||| |||| |||||||| Sbjct 599 ACTAGTACCGGACGAAGTCATTTGCCTGACCTCAACATCGCTCTCACCCCGACCGTGACT 658 Query 640 TCTTTGCCAGCTCTTTGCCTTCAGGACTCTAGCGAATCCTCTACCAATGGTTCAACAGGT 699 |||||||||||| |||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 659 TCTTTGCCAGCTGGTTGCCTTCAGGACTTTAGTGAATCCTCTAACAAAGGTTCAACAGGT 718 Query 700 CAAGAAACGCTTCTTCTATTCCGATGAGAAATGGT-GTATTTGTTTGTACACATTTGTTA 758 |||||||||||||||||||||| |||| |||| || |||||| ||||||||||| |||| Sbjct 719 CAAGAAACGCTTCTTCTATTCCAATGA-AAATTGTTGTATTTCTTTGTACACAT--GTTA 775 Query 759 TATTACAAATGCAC--ATATTATAATATTCACTAGAGAGATGGTATAACGATGTTTGAAA 816 |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 776 CATTACAAAGGCCCCTATATTATAATATTCACTAGAGAGATG-TATAACGATGTTTGAAA 834 Query 817 TATGTTAATCCTGAATTGGACCGGCTGGTCATTGAACAACTATTCTCTTAAATGTCCGGT 876 ||||||||||||||||||||||| || | |||||||||||||||||||||| ||| Sbjct 835 TATGTTAATCCTGAATTGGACCGT-TG---A---AACAACTATTCTCTTAAATGTCTGGT 887 Query 877 TCTGTTTTCAGTGATTAGTA 896 | ||||||| |||||||||| Sbjct 888 TTTGTTTTCGGTGATTAGTA 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36636123237 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5