BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71040.1 Length=2079 Score E Sequences producing significant alignments: (Bits) Value Ahg476236 jgi|Araly1|476236|fgenesh2_kg.2__1366__AT1G71040.1 2680 0.0 Ahg472551 jgi|Araly1|472551|fgenesh2_kg.1__2505__AT1G23010.1 913 0.0 > Ahg476236 jgi|Araly1|476236|fgenesh2_kg.2__1366__AT1G71040.1 Length=1968 Score = 2680 bits (1451), Expect = 0.0 Identities = 1755/1897 (93%), Gaps = 40/1897 (2%) Strand=Plus/Plus Query 1 AACTTCTCTCCTCAACTTTTAAGTATTCcacacatacaaacacacacacacacTTGACTT 60 |||||||||||||||||||||||||||||||||||||||||||||| | |||| | Sbjct 1 AACTTCTCTCCTCAACTTTTAAGTATTCCACACATACAAACACACA-A-ACAC---A--- 52 Query 61 TTCTCATATAATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCT-----T-CTCGGA 114 | ||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 53 ----C-----ATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCTAAGCCTGCTCGGA 103 Query 115 GGAGAATGACCAGAGACATGTTGCTTCTAATCGTAACGATGGCATGGCTCGTAACCGGAG 174 ||| |||||||||||||||||| || ||||||||| ||||| |||||||||||||||||| Sbjct 104 GGATAATGACCAGAGACATGTTCCTCCTAATCGTAGCGATGACATGGCTCGTAACCGGAG 163 Query 175 ACGAAGGAGGCATAAA-GCAAGAGGAGCGACTGTTTAATCTTGGGAAGCTTGAGATGTTC 233 ||| |||||||||||| || ||||||||||||||| ||||||| |||||| ||||||||| Sbjct 164 ACGCAGGAGGCATAAAGGC-AGAGGAGCGACTGTTCAATCTTGAGAAGCTAGAGATGTTC 222 Query 234 GTTGACAAGCTTCCTCATATACCAACACTTCATGGCTACCACTTCGTCAATGGCTTCCTC 293 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 223 GTTGACAAGCTTCCTCATATACCTACTCTTCATGGCTACCACTTCGTCAATGGCTTCCTT 282 Query 294 AAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 353 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 AAACCCAAATCTCTTAACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 342 Query 354 CCTGCCACGCCAGTGTTCGCATATGGTACATCAAAG-CGT-TCAGCAACAGTTCCTGGAC 411 |||||||||||||||||||| ||||||||||| || ||| | ||| ||||||||||||| Sbjct 343 CCTGCCACGCCAGTGTTCGCGTATGGTACATC-GAGACGTGT-AGCCACAGTTCCTGGAC 400 Query 412 CAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACGTGGCGAAATCACCTCCCTT 471 | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 401 CGACAATAGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTT 460 Query 472 TACATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGCAATCCCTAAACACGGCGGCA 531 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 461 TACATCATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATCCCTAAACACGGCGGCA 520 Query 532 TTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAACCAACTAGCGATGGAAATGCAG 591 ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 521 TTCCCACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAG 580 Query 592 ATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCCAAATGGACCAAAAAGACTACAC 651 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 581 ATTCATGGTTCACCGCTGGTTTCAAAGAGACAGGTTCCAAATGGACCAAAAAGACTACGC 640 Query 652 ATTACGTCAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGGCAGGG-TTG 710 ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 641 ATTACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGC-GTTGGGTTTG 699 Query 711 ACCAGAGTCAACCTTCTTGCCGGTTTGTTAGGCT-CTTACATTCTCCGTCATAGCTCAGT 769 ||||||||||||||||| |||||||||||||| | ||||||||||||| || ||||| || Sbjct 700 ACCAGAGTCAACCTTCTCGCCGGTTTGTTAGG-TGCTTACATTCTCCGCCACAGCTCCGT 758 Query 770 CGAATCGCCTCTTCGGTTACCTACCGGACGCGAATTCGATCGTCCTTTGGTCATCTTTGA 829 |||||||||||| || |||||||||| || ||||| ||||||||||||||||||||||| Sbjct 759 CGAATCGCCTCTCCGACTACCTACCGGCCGTGAATTTGATCGTCCTTTGGTCATCTTTGA 818 Query 830 CCGATCTTTTCGTAAAGATGGTTCCATTTACATGAACGCTACAGGGAACAATCCAACGAT 889 |||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878 Query 890 TCATCCACAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCATG 949 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938 Query 950 GCCGAGATTAACCGTCCGCCGCCGGAAATATAGATTTCGAATCACAAACGCTAGTAACGC 1009 |||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998 Query 1010 AAGGTTCTTCCGGTTCTTCTTCTCCAACGGTCTCGACTTCATTGTCGTTGGTTCCGATTC 1069 |||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 999 AAGGTTTTTCCGGTTTTTTTTCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058 Query 1070 CGCTTATCTAGCGAAACCAGTATCGACCAAATCTGTTCTCCTAGCTCCGTCGGAGATTGT 1129 ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| | Sbjct 1059 AGCTTACCTAGCGAAACCAGTATCGACCAAATCAGTTCTACTTGCTCCGTCGGAGATTAT 1118 Query 1130 CGACGTAC-TCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1188 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 CGACGT-CGTCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1177 Query 1189 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1237 Query 1249 TTATAATCAACTACAAATCAGAAGTTGACACGTCGATTATTCCGAAGAAGCTAATTGAAT 1308 ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1238 TTAAAATCAAGAACAAATCAGAAGTTGACACGTCGACTATTCCGAAGAAGCTAATTGAAT 1297 Query 1309 ACCCTCCTGCTCATGTATCAACCTCCACACGTACACGTTACATTGCTATGTTCGAGTATG 1368 |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1298 ACCCGCCTGCTAATGTATCAACCTCCTCACGTACACGTTACATTGCTATGTTCGAGTATG 1357 Query 1369 TGTCAAGCATTGACGAGCCAACACATCTATACATCAACGGTCT-GCCTTACAACGCTCCC 1427 |||| |||| |||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1358 TGTCTAGCACTGACGAGCCAACACATCTATACATCAACGG-CTTGCCGTACAACGCTCCC 1416 Query 1428 GTAACCGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAG 1487 || || ||||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 1417 GTGACAGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATTAATTTGACGGAG 1476 Query 1488 GATAACCATCCGTTGCACATTCACTTGGGATTGTTTAAAGTATTGGAGCAAACGGCATTG 1547 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1477 GATAACCATCCATTGCACATTCACTTGGGATTGTTCAAAGTATTGGAGCAAACGGCATTG 1536 Query 1548 GTGAAGAGTGAGGAGTTCATAGAGTGCATGACTAAAAGAAA-CGATGCCGTCAAGTGTGA 1606 ||||| ||||||||||||||||| || ||||||||| |||| |||||||||||||||| | Sbjct 1537 GTGAATAGTGAGGAGTTCATAGACTGTATGACTAAA-GAAAACGATGCCGTCAAGTGTCA 1595 Query 1607 GATTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAA 1666 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1596 GATTAGCAAATACGCACTAGGGAACAAGACCGCGGTGACGGTACACGAGCGGGGATGGAA 1655 Query 1667 AAACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACAT 1726 |||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| Sbjct 1656 AAACGTATTCAAGATGATGCCGGGGCATGTCACGAAGATCCTCGTCAGATTTTCTTACAT 1715 Query 1727 TCACTCAAACGAATCTTACTCCTTTGACGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786 |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 1716 TCACTCGAACGAATCTTACTCCTTTGATGCAACTCAAGAGCCAGGCTATGTCTACCATTG 1775 Query 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATAATT 1846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1776 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATGATT 1835 Query 1847 CTAAAACGAAAACAATTTACAATTACGAGTGCAGAAT 1883 ||||||| ||| ||| ||| ||||||||||||||||| Sbjct 1836 CTAAAACTAAA-CAACTTATAATTACGAGTGCAGAAT 1871 > Ahg472551 jgi|Araly1|472551|fgenesh2_kg.1__2505__AT1G23010.1 Length=2036 Score = 913 bits (494), Expect = 0.0 Identities = 1290/1663 (78%), Gaps = 99/1663 (6%) Strand=Plus/Plus Query 219 AAGCTTGAGATGTTCGTTGACAAGCTTCCTCATATACCAACACTTC-ATGGCTACCACTT 277 |||||| |||||||||| ||| | || || |||| || | || || |||||| || | Sbjct 184 AAGCTTAAGATGTTCGTCGACGACCTCCCAGATATGCCTAGAC-TCTATGGCTTTAAC-T 241 Query 278 C-G-TCAATGGCT-TCCTCAAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATG 334 | | || || | | || ||||||||| |||||||| || |||||||||| || ||||| Sbjct 242 CTGTTC-AT-GATATCATCAAACCCACTTCTCTTCAAATCGGCATGTTCTCCACTAAATG 299 Query 335 GAAATTCCACAGAGACTTGCCTGCCACGCCAGTGTTCGCATATGGTACATCAAAGCGTTC 394 ||||||||| ||||| |||||||| ||||| ||||| || ||||||||||| | | | | Sbjct 300 GAAATTCCATAGAGATTTGCCTGCGACGCCTGTGTTTGCGTATGGTACATC-ACG-GAGC 357 Query 395 -A-GCAACAGTTCCTGGACCAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACG 452 | ||||| |||||||| || || || |||||||||||||| || ||||| ||||| || Sbjct 358 AAGGCAACGGTTCCTGGTCCGACGATCGAAGCTGTTTATGGAGTAGACACATACGTTACA 417 Query 453 TGGCGAAATCACCTCCCTTTA-CATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGC 511 |||||||||||||| |||| | | ||| ||||| ||||||||||| ||||| || || || Sbjct 418 TGGCGAAATCACCTTCCTTCATC-TCACATCCTTCCTTGGGACCCTACAATTTCCCCTGC 476 Query 512 AATC-CCTAAACACGGCGGCATTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAAC 570 || | || |||||||| || ||||| ||||| |||||||| || || || |||||||||| Sbjct 477 AA-CTCCAAAACACGGTGGAATTCCTACGGTTGTTCACTTACATGGTGGAATCCACGAAC 535 Query 571 CAACTAGCGATGGAAATGCAGATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCC- 629 |||| || ||||||||||| || |||||||||| || ||||| | ||| || || || Sbjct 536 CAACAAGTGATGGAAATGCCGACGCATGGTTCACTGCCGGTTTTAGAGAGACAGG-ACCA 594 Query 630 AAATGGACCAAAAAGAC-TACACATTACGTCAACAAGCAACAACCTGGAAACATGTGGTA 688 ||||||||||||| ||| | ||||||| || |||||||||||||| ||||||||||| Sbjct 595 AAATGGACCAAAACGACGT-TGCATTACGAGAATAAGCAACAACCTGGTAACATGTGGTA 653 Query 689 CCATGACCACGCGGCA-GGG-TTGACCAGAGTCAACCTTCTTGCCGGTTT-GTTAGGCT- 744 ||||||||| || || ||| |||||| |||||||||| || |||||||| ||| || | Sbjct 654 CCATGACCATGC--CATGGGTTTGACCCGAGTCAACCTCCTCGCCGGTTTGGTT-GG-TG 709 Query 745 CTTACATTCTCCGTCA-TAGCTCAGTCGAATCGCCTCTT-CGGTTACCTACCGGACG-CG 801 | || ||||| || || | | | || ||||| || || | | |||| || || || | Sbjct 710 CCTATATTCTTCGCCACCA-CGCCGTAGAATCTCC-GTTGCAGCTACCCACTGG-CGATG 766 Query 802 AATTCGATCGTCCTTTGGTCATCTTTGACCG-ATCTTTTCGTAAAGATGGTTCCATTTAC 860 ||||||| || || ||| |||| ||||| || | | || |||||||| || || |||||| Sbjct 767 AATTCGACCGACCGTTGATCATTTTTGATCGAAGC-TTCCGTAAAGACGGGTCAATTTAC 825 Query 861 ATGAACGCTACAGGGAACAATCCAACGATTCATCCACAATGGCAGCCAGAGTA-TTTCGG 919 |||||||| || |||||||| ||| ||||||| || |||||||| || || || ||| || Sbjct 826 ATGAACGCGACTGGGAACAACCCATCGATTCACCCGCAATGGCAACCGGAATACTTT-GG 884 Query 920 CGACGCCATCATTGTGAACGGTAAAGCATGGCCGA-GATTAACCGTCCGCCGCCGGAAAT 978 ||| | || || || || || ||||||||||| | |||||| |||||| || |||||| Sbjct 885 CGATGTGATAATCGTTAATGGAAAAGCATGGCC-ACGATTAAACGTCCGACGTAGGAAAT 943 Query 979 ATAGATTTCGAATCACAAACGCTAGTAACGCAAGGTTCTTCCGGTTCTTCTTCTCCAACG 1038 | ||||| || |||| |||||| || ||||| || || ||| || ||||||||||||| Sbjct 944 ACAGATTCCGTATCATAAACGCAAGCAACGCTAGATTTTTCAAATTTTTCTTCTCCAACG 1003 Query 1039 GTCTCGACTTCATTGTCGTTGGTTCCGATTCCGCTTATCTAG-CGAAACCAGT-ATCGAC 1096 |||| | ||||| || || ||||| ||||| || ||| | | | ||||| || || ||| Sbjct 1004 GTCTAAATTTCATCGTTGTGGGTTCTGATTCGGCGTAT-TTGTCAAAACCGGTGAT-GAC 1061 Query 1097 CAAATCTG-TTCTCCTAGCTCCGTCGGAGATTGTCGACGTAC-TCGTTGACTTT-TC-AA 1152 |||||| | ||||| || ||||||| || ||||| ||||| | ||||||| ||| || || Sbjct 1062 CAAATC-GATTCTCTTATCTCCGTCAGAAATTGTAGACGT-CATCGTTGA-TTTCTCGAA 1118 Query 1153 AGTCAACATCGAAAACGGCAATTCTTGCCAACAATGCACCTTATCCTTACCCGTCG-GGA 1211 | ||| |||||| ||| | | || || ||| | || || |||||||| || | | || Sbjct 1119 A-TCACCATCGAGAACCGTGGTACTCGCTAACGACGCGCCGTATCCTTATCC-TAGTGGT 1176 Query 1212 GATCCCGTC-ACGGAAGAGAACAGCAAAGTCATGAAGTTTATAATCAACTACAAATC-AG 1269 ||||| ||| || ||||| || |||| || ||||| ||||| |||||| || || | || Sbjct 1177 GATCCGGTCAAC-GAAGAAAATGGCAAGGTAATGAAATTTATCATCAACAACGAA-CGAG 1234 Query 1270 AAGTTGACACGTCG-ATTATTCCGAAGAAGCTAATTGAA-TACCCTCCTGCTCA-TGTAT 1326 | | |||| | | | | ||||| |||||||| | | || ||||| | |||| | | | | Sbjct 1235 AGGATGACTCAT-GTACAATTCCCAAGAAGCTCA-TCAACTACCCGCATGCTGACT-TGT 1291 Query 1327 CAACCTCCACACGTACA--CGTTACAT-TGCTATGTTCGAGTATGTG-TCAAGCAT-TGA 1381 ||| | | || | || |||||||| | |||||| |||||| ||| ||| | | ||| Sbjct 1292 CAAACGCGGTAC-T-CAGGCGTTACATCT-CTATGTACGAGTACGTGAGCAA-C-TCTGA 1346 Query 1382 CGAGCCAACACATCTATAC-A-TCAACGGTC-TGCCTTACAACGCTCCCGTAACCGAAAC 1438 || ||||| ||| | | | | ||||||| | | || || | ||||| || || ||||| Sbjct 1347 TGAACCAACTCAT-T-TGCTAGTCAACGG-CTTACCCTATGATGCTCCTGTCACAGAAAC 1403 Query 1439 TCCAAAAATC-GGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAGGATAACCATC 1497 ||| |||||| || || | ||||| ||||||||||||||| || || ||||||||||||| Sbjct 1404 TCC-AAAATCAGGAACCACCGAGGCGTGGGAAGTGATAAATTTGACGGAGGATAACCATC 1462 Query 1498 CGTTGCACATTCACT-TGGGATTGTTTAAAGTATTGGAGCAAACGGCA-T--TGG-TG-A 1551 |||| |||||||| | | |||||||| ||||| | |||||||||||| | ||| | Sbjct 1463 CGTTACACATTCA-TCTAGGATTGTTCAAAGTGGTAGAGCAAACGGCATTACTGGCGGCG 1521 Query 1552 AGAGT-GAGGAGTTCATA-GAGTGCATGACTAAA-AGAAACGATGCCGTCAAGTGTGAGA 1608 || | |||||||||| | || || ||||| ||| | |||||| || |||||||| | | Sbjct 1522 GGATTGGAGGAGTTCA-AGGAATGTATGACGAAACA-AAACGACGCGGTCAAGTGCCAAA 1579 Query 1609 TTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAAAA 1668 | ||||||||||| || ||||| ||||| || || |||| ||||||| |||| ||||| | Sbjct 1580 TCAGCAAATACGCTCGTGGGAAAAAGACGGCAGTGACGGCACACGAGAGGGGTTGGAAGA 1639 Query 1669 ACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACATTC 1728 |||||||||||||||||||||||||||| |||| ||||||||| | ||||| || || | Sbjct 1640 ACGTATTCAAGATGATGCCGGGACATGTTACGAGGATACTCGTCCGCTTTTCGTATATCC 1699 Query 1729 ACTCAAACGAATCTTACTCCTTT-GA-CGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786 || | |||| ||| ||| || || || | | || | ||| || |||||||| ||||| || Sbjct 1700 ACACTAACGCATCGTAC-CCATTCGATC-CGACCCTAGAACCTGGCTATGTCTACCATTG 1757 Query 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCC-CTT 1828 |||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1758 TCACATATTGGACCATGAGGACAATATGATGATGAGGCCGCTT 1800 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78199272985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5