BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71080.1 Length=1324 Score E Sequences producing significant alignments: (Bits) Value Ahg476240 jgi|Araly1|476240|fgenesh2_kg.2__1370__AT1G71080.1 1832 0.0 Ahg337082 jgi|Araly1|337082|fgenesh1_pg.C_scaffold_1003647 409 3e-113 > Ahg476240 jgi|Araly1|476240|fgenesh2_kg.2__1370__AT1G71080.1 Length=1281 Score = 1832 bits (992), Expect = 0.0 Identities = 1203/1299 (93%), Gaps = 38/1299 (3%) Strand=Plus/Plus Query 12 AAAATTCTGATCTCGGATTCGTCTTCTCTGCCCTAAAAGAAAAACCCTACGTGAGCTGCG 71 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AAATTTCTGATCTCGGATTCGTCTTCTCTGCCCT-AAAGAAAAACCCTACGTGAGCTGCG 59 Query 72 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGATATCTCAAGTTTCGC-AAAGTCTC 130 |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||| Sbjct 60 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGAGACCTCAAGTTTCGCGAAA-TCTC 118 Query 131 G-T--G--GATTTGATCTTCGTC-TCCTTGATCGATGGATTCACCTTGAGCAATCGTTGA 184 | | | ||||||||||||||| ||| ||||||||||||||||||||| |||||||| | Sbjct 119 GTTGCGTCGATTTGATCTTCGTCTTCC-TGATCGATGGATTCACCTTGATCAATCGTTAA 177 Query 185 TCGAGCTTCGAAGATGTCGAATCACTCCAGAGATGAGCCTAGTACTGCCCCGAAGACAGA 244 ||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||| Sbjct 178 TCGAGCTTCGAAGATGTCGAATCACTCCATAGATGAACCCAGTACCGCCCCGAAGACAGA 237 Query 245 TCAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGACTCCTCCCATAAATTCTG 304 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 238 TCAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGATTCCTCCCATAAATTCTG 297 Query 305 CACTTTGCGATATGAATTTAAGCCGGCTTCAATCGATAAGAACAGGTCAGGATCAATGCA 364 |||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||| Sbjct 298 CACTTTGCGATATGAATTCAAGCCGGCTTCAATAGATAAGAACAGGTCAGGAACACTGCA 357 Query 365 CAAGAAGAAGGATAACAGAGTTTCAGTTGAGTTTCAGAATAACCAACCA-GGTAAACCCA 423 |||||||||||||||||||||||| | ||| ||||||||||||||| || |||||||||| Sbjct 358 CAAGAAGAAGGATAACAGAGTTTCTGCTGAATTTCAGAATAACCAA-CATGGTAAACCCA 416 Query 424 AGGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTC 482 | |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 417 AAGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTC 475 Query 483 GATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTT 542 |||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| || Sbjct 476 GATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTT 535 Query 543 AGGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---AT 596 |||||||| |||||||||||||||| ||||||| ||||| |||||||||||| || Sbjct 536 AGGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAAT 595 Query 597 CGGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCT 656 || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 596 CGATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCA 655 Query 657 GATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCT 715 Query 717 GCCAACACTGGAAACGTGCCTGCAACCTCACCAGTCGAGGACAAGAACGATGATGGAGAT 776 |||| | |||||||||| |||| |||||||||| || ||||||||||||||||||||| Sbjct 716 GCCATCGCTGGAAACGTATCTGCTGCCTCACCAGTTGATGACAAGAACGATGATGGAGAT 775 Query 777 GAGCATCAAGAGATCGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAAT 836 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 GAACATCACGAGATTGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAAT 835 Query 837 GCAGAGAAAGAGAACGCTGATGGTGGAGAATATGTAGAAAGCTTAAATAAACAGCTTAGC 896 |||||||||||||| ||||| |||||||| || || ||||||||||| |||||||||||| Sbjct 836 GCAGAGAAAGAGAATGCTGACGGTGGAGAGTACGTCGAAAGCTTAAACAAACAGCTTAGC 895 Query 897 ATGACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGCGGTGAAGGAGAAAAAGGT 956 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 896 ATCACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGTGGTGAAGGAGAAAAAGGT 955 Query 957 CTTAACGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACC 1016 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 CTAAATGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACC 1015 Query 1017 TCAAGCTCAAGCAGTAGCAGTGGAAGTAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAA 1076 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1016 TCAAGCTCAAGCAGTAGCAGTGGAAGCAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAA 1075 Query 1077 AGCGTAAGCAGCGGAAGTGGCAGCGGCGGCCAAAGCAGTAGTGGAAGCAGTAGCCGTGGA 1136 ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 1076 AGCGTAAGCAGCGGAAGTGGCAGCGGCGGGCAAAGCAGCAGCGGAAGCAGTAGCCGTGGA 1135 Query 1137 AGTGGAGGAAGTGACGATGAAGATGAAGTCAACTCCGTATAACAA-CCAGCTCCCAACAA 1195 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1136 AGTGGAGGAAGCGACGATGAAGATGAAGTCAACTCCGTATAACAAACCAGCTCC-AACAA 1194 Query 1196 CTTTGT--CAAACAATATTTCCATATTTGAGACACTT-TGTCTGAATAATTTGGTTGAAG 1252 |||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1195 CTTTGTATCAAACAATATTTCCATATTTGAGACACTTGTGTCTGAATAATT--------- 1245 Query 1253 AATCCAAAAGGGTAAAAA-TTTATGTTTTACTACGAAAG 1290 ||||||||||||||| |||||||||||||||||||| Sbjct 1246 ---CCAAAAGGGTAAAAAATTTATGTTTTACTACGAAAG 1281 > Ahg337082 jgi|Araly1|337082|fgenesh1_pg.C_scaffold_1003647 Length=435 Score = 409 bits (221), Expect = 3e-113 Identities = 269/291 (92%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 425 GGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTCG 483 ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| Sbjct 141 GGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTCG 199 Query 484 ATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTTA 543 ||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| Sbjct 200 ATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTTA 259 Query 544 GGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---ATC 597 ||||||| |||||||||||||||| ||||||| ||||| |||||||||||| ||| Sbjct 260 GGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAATC 319 Query 598 GGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCTG 657 | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | Sbjct 320 GATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCAG 379 Query 658 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG 708 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG 430 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49521669183 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5