BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71140.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908719 jgi|Araly1|908719|Al_scaffold_0002_1800 2200 0.0
Ahg908717 jgi|Araly1|908717|Al_scaffold_0002_1798 1849 0.0
Ahg926462 jgi|Araly1|926462|scaffold_202023.1 732 0.0
> Ahg908719 jgi|Araly1|908719|Al_scaffold_0002_1800
Length=1446
Score = 2200 bits (1191), Expect = 0.0
Identities = 1354/1435 (94%), Gaps = 2/1435 (0%)
Strand=Plus/Plus
Query 86 ATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAAGAAGTAAACAAGAAA 145
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 ATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCCACGGAGAAGAAGTAAACAAGAAA 60
Query 146 GATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGTCCGATGATTGCAGTG 205
||||||||||||||||| | ||||| ||| |||||||||||||||| |||||||| |||
Sbjct 61 GATGGGTTTTTGCGGGAGATGAAGAGGCTTGGTTACATCGCCGGTCCCATGATTGCTGTG 120
Query 206 AACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTTGGTCATCTCGGTGAG 265
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 AACTCGTCTATGTATGTTCTTCAGGTGATATCGATTATGATGGTTGGTCATCTCGGTGAG 180
Query 266 CTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTCACCGGTTTCAGCGTC 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTCACCGGTTTCAGCGTC 240
Query 326 GTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCTAATGGAGCTAAGCAA 385
| ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 241 CTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTGTGGTCAAGCTAATGGGGCTAAGCAA 300
Query 386 TAT-GAGAAGCTTGGTGTTCATACTTACACAGGAATTGTCTCTTTGTTTCTTGTGTGTAT 444
| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 301 T-TCGAGAAGCTTGGTGTTCATACTTACACAGGGATTGTCTCTTTATTTCTTGTGTGTAT 359
Query 445 TCctctctctcttctctGGACATACATTGGTGATATACTTTCTCTTATTGGACAAGATGC 504
|||||| ||| | || |||| ||||| ||||||||||||||||| |||||||||||| |
Sbjct 360 TCCTCTGTCTGTGCTATGGAGTTACATGGGTGATATACTTTCTCTGATTGGACAAGATCC 419
Query 505 TATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATACCCGCGCTCTTTGGTTA 564
||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 420 TATGGTTGCTCAACAAGCAGGAAAGTTTGCGACTTGGCTCATACCCGCGCTCTTTGGTTA 479
Query 565 CGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAAGCACAGTCTCTGATTTTGCCTTTGGT 624
||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 480 CGCTATTTTGCAGCCTCTTGTTCGGTTTTTCCAAGCGCAGAGTCTGATTTTGCCTTTGAT 539
Query 625 TATGAGTTCAGTCTCTTCTCTCTGTATCCACATTGTCCTCTGTTGGAGCTTGGTCTTTAA 684
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 540 TATGAGCTCAGTCTCTTCTCTCTGTGTCCACGTTGTCCTCTGTTGGAGCTTGGTCTTTAA 599
Query 685 GTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGT 744
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTTGGTCTTGGGAGCGTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGT 659
Query 745 GACTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTAT 804
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GATTGTTCTTGGATTATACATGACGTTTTCTTCCAGCTGTAGCAAGAGCCGTGCAACTAT 719
Query 805 CTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATC 864
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 720 CTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTCGGAATCCCATCAGCGTC 779
Query 865 TATGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAGTCCTGCTCTCTGGTATTTTACC 924
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 780 TATGATTTGCCTCGAGTGGTGGTCATTCGAATTTTTGGTCCTGCTCTCTGGGATTTTACC 839
Query 925 AAATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACACAATCCTCCTTGTA 984
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 AAATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACACAAGCCTCCTTGTA 899
Query 985 CCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAGC 1044
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCAAGTCCCAGAGAGTCTCGGCGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAGC 959
Query 1045 TGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAGA 1104
||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 960 TGGCAACCCGAAACAAGCTCGAAAGGCGGTTTACACAGTGATGGTTATAACAAGTGTAGA 1019
Query 1105 ATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATTTGGTTACCTATTCAG 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATTTGGTTACCTATTCAG 1079
Query 1165 TTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCGGT 1224
|||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 1080 CTCTGAAACTGAAGTTGTAGATTATGTAAAAACAATGGCTCCACTGGTTTCTTTATCGGT 1139
Query 1225 CATATTCGATGCCCTTCACGCAGCTCTCTCGGGTGTGGCTAGAGGATCAGGGAGGCAAGA 1284
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1140 CATATTTGATGCCCTTCACGCAGTTCTCTCCGGTGTGGCTAGAGGATCAGGGAGGCAAGA 1199
Query 1285 TATTGGGGCATACGTAAACCTAGCAGCATACTATCTCTTTGGAATACCAACTGCTATACT 1344
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1200 TATTGGGGCTTACGTAAACCTAGCAGCATACTATCTCTTTGGGATACCAACTGCTATAAT 1259
Query 1345 ATTAGCTTTTGGGTTTAAAATGAGAGGAAGAGGACTCTGGATTGGAATCACAGTTGGGTC 1404
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1260 ATTAGCTTTTGGGTTTAAAATGATAGGAAGAGGACTCTGGATTGGGATCACAGTTGGATC 1319
Query 1405 ATGTGTACAAGCTGTTTTGCTCGGTCTTATCGTAATCCTCACTAATTGGAAAAAACAGGC 1464
| ||||||||||||||||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 1320 CTTTGTACAAGCTGTTTTGCTCGGGCTTATCGTCATCCTTACCAACTGGAAAAAACAGGC 1379
Query 1465 gagaaaggctagagaaagagtgatgggtgatgagtatgaagagaaagaaagtgaa 1519
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 GAGAAAGGCTAGAGAAAGAGTGATGGGTGATGAGTATGAAGAGAAAGAGAGTGAA 1434
> Ahg908717 jgi|Araly1|908717|Al_scaffold_0002_1798
Length=1503
Score = 1849 bits (1001), Expect = 0.0
Identities = 1292/1432 (90%), Gaps = 21/1432 (1%)
Strand=Plus/Plus
Query 121 CGACAGAGAAGAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTA 180
|||| ||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||||||
Sbjct 84 CGACGGAGAACAAGTAAACACGAAAGATGGTTTTTTACGGGAGACGAAGAAACTTAGTTA 143
Query 181 CATCGCCGGTCCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTAT 240
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 144 CATCGCCGGTCCGATGATTGCGGTGAGCTCGTCTATGTATGTTCTTCAGGTGATATCGAT 203
Query 241 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 204 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCAATTGCCGTTTCTTT 263
Query 301 CTGCAGCGTCACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATG 360
|||| ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 264 CTGCGGCGTCACCGGTTTAAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTG 323
Query 361 TGGTCAAGCTAATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGA 418
|||||||||| ||||||||||||||| | |||||||||||| | |||||||||||||||
Sbjct 324 TGGTCAAGCTCATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGG 381
Query 419 ATTGTCTCTTTGTTTCTTGTGTGTATTCctctctctcttctctGGACATACATTGGTGAT 478
|||||||||||||||||||||||||||||| | ||| | || |||| ||||| ||||||
Sbjct 382 ATTGTCTCTTTGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGAT 441
Query 479 ATACTTTCTCTTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACT 538
|||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 442 ATACTTTCCCTTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGGAAGTTTGCAACT 501
Query 539 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 502 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGTTTTTTCCAA 561
Query 599 GCACAGTCTCTGATTTTGCCTTTGGTTATGAGTTCAGTCTCTTCTCTCTGTATCCACATT 658
|| ||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||| ||
Sbjct 562 GCGCAGAGTCTAATTTTGCCTTTGATTATGAGCTCAGTCTCTTCTCTCTGTGTCCACGTT 621
Query 659 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCG 718
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 622 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGGAGCCTCGGTGCAGCTATTGCG 681
Query 719 ATCGGTGTTTCTTACTGGCTAAACGTGACTGTTCTTGGATTATACATGACGTTTTCTTCT 778
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 682 CTTGACGTTTCTTACTGGCTAAACGTGATTGTTCTTGGATTATACATGACGTTTTCTTCT 741
Query 779 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTT 838
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 742 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTGTGTTTAAAGGAATGGGAGAGTTT 801
Query 839 TTCCGGTTTGGAATCCCATCTGCATCT-ATGATTTGCCTTGAGTGGTGGTCATTCGAATT 897
|||||||||||| |||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 802 TTCCGGTTTGGAGTCCCATCTGCC-CTTATGATTTGCCTCGAGTGGTGGTCATTCGAAAT 860
Query 898 TTTAG-TCCTGCTCTCTGGTATTTTACCAAATCCGAAGCTAGAAGCCTCTGTTCTCTCAG 956
| | | || | |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 861 TCT-GCTCTTACTCTCTGGGATCTTACCAAATCCAAAGCTAGAAGCCTCTGTTCTCTCAA 919
Query 957 TCTGTCTTTCAACA--CAATCCTCCTTGTACCAAATCCCAGAGAGTCTCGGTGCAGCAGC 1014
||||||| |||||| ||| | || | ||||||||| ||| |||||||| ||||||||
Sbjct 920 TCTGTCTATCAACAATCAA-CATCGT-GTACCAAATAGCAGCTAGTCTCGGCGCAGCAGC 977
Query 1015 AAGTACAAGAGTTGCAAACGAGTTAGGAGCTGGAAACCCGAAACAAGCTCGAATGGCGGT 1074
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 978 AAGTACAAGAGTTGCAAACGAATTAGGAGCTGGAAAACCGAAACAAGCTCGAATGGCGGT 1037
Query 1075 TTACACAGCGATGGTTATAACAGGTGTAGAATCAATAATGGTGGGTGCAATAGTCTTTGG 1134
|||||||| |||||| || |||||||||||||||||||||||| | |||||||| ||| |
Sbjct 1038 TTACACAGTGATGGTCATTACAGGTGTAGAATCAATAATGGTGAGCGCAATAGTTTTTAG 1097
Query 1135 TGCAAGAAATGTATT-TGGTTACCTATTCAGTTCTGAAACTGAAGTTGTAGACTATGTAA 1193
||||||||| || || |||||||||||| || |||||||| |||||||| || |||| ||
Sbjct 1098 TGCAAGAAACGT-TTATGGTTACCTATTTAGCTCTGAAACCGAAGTTGTGGATTATG-AA 1155
Query 1194 A-ATCAATGGCTCCACTGCTTTCTTTATCGGTCATATTCGATGCCCTTCACGCAGCTCTC 1252
| |||||||| |||| || || |||||||||||||||||||||| ||||||||| |||
Sbjct 1156 AGATCAATGGTTCCATTGGTTGCTTTATCGGTCATATTCGATGCTTTTCACGCAGTTCT- 1214
Query 1253 T-CGGGTGTGGCTAGAGGATCAGGGAGGCAAGATATTGGGGCATACGTAAACCTAGCAGC 1311
| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1215 TGCGGGTGTGACTAGAGGATCAGGGAGGCAAGATATTGGGGCTTACGTAAACCTAGCAGC 1274
Query 1312 ATACTATCTCTTTGGAATACCAACTGCTATACTATTAGCTTTTGGGTTTAAAATGAGAGG 1371
||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1275 ATACTATCTCTTTGGGATACCAACTGCTATAATATTAGCTTTTAGGTTTAAAATGAGAGG 1334
Query 1372 AAGAGGACTCTGGATTGGAATCACAGTTGGGTCATGTGTACAAGCTGTTTTGCTCGGTCT 1431
||||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||| |
Sbjct 1335 AAGAGGAATCTGGATTGGGATCACAGTTGGATCCTTTGTGCAAGCTGTTTTGCTCGGTTT 1394
Query 1432 TATCGTAATCCTCACTAATTGGAAAAAACAGGCgagaaaggctagagaaagagtgatggg 1491
| | || ||||| || || |||||| ||||||||||| | || ||||||||| |||||||
Sbjct 1395 TCTTGTCATCCTTACCAACTGGAAACAACAGGCGAGAGATGCGAGAGAAAGACTGATGGG 1454
Query 1492 tgatgagtatgaagagaaagaaagtgaagaagaaCATGAATACATCAGCTAA 1543
||| | || |||||| |||||||||||||| |||||| | |||||||||
Sbjct 1455 TGAGGGGTTTGAAGATAAAGAAAGTGAAGAT---CATGAAGAGATCAGCTAA 1503
> Ahg926462 jgi|Araly1|926462|scaffold_202023.1
Length=1228
Score = 732 bits (396), Expect = 0.0
Identities = 486/530 (92%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 71 GAAGAAGAAGAGAGAATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAA 130
||||||| ||||||||||||||||| ||||||||| |||||||| || | |||| |||||
Sbjct 6 GAAGAAGCAGAGAGAATGGATTCGGTGGAGAAGGGATTGCTTGTGGTTAACGACGGAGAA 65
Query 131 GAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGT 190
||||||||| |||||||| ||||| ||||| | |||||||||||||||||| ||||||
Sbjct 66 CAAGTAAACACGAAAGATGTTTTTTTACGGGAGATGAAGAAACTTAGTTACATTGCCGGT 125
Query 191 CCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTT 250
||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 126 CCGATGATTGCGGTGCACTCGTCTATGTATGTTCTTCAGGTGATCTCGATAATGATGGTT 185
Query 251 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTC 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 186 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCGGCGTC 245
Query 311 ACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCT 370
|| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 246 ACTGGTTTCAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTGTGGTCAAGCT 305
Query 371 AATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGAATTGTCTCTT 428
|||||||||||||||| | |||||||||||| | ||||||||||||||| ||||||||||
Sbjct 306 AATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGGATTGTCTCTT 363
Query 429 TGTTTCTTGTGTGTATTCctctctctcttctctGGACATACATTGGTGATATACTTTCTC 488
|||||||||||||||||||| | ||| | || |||| ||||| ||||||||||||||||
Sbjct 364 TGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGATATACTTTCTC 423
Query 489 TTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATAC 548
|||||||||||||| |||||||||||||| |||| || |||| |||||||||||||||||
Sbjct 424 TTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGAAAGTATGCAACTTGGCTCATAC 483
Query 549 CCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 484 CCGCGCTCTTTGGTTACGCTACTTTGCAACCGCTTGTTCGGTTTTTCCAA 533
Score = 706 bits (382), Expect = 0.0
Identities = 502/560 (90%), Gaps = 8/560 (1%)
Strand=Plus/Plus
Query 687 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGTGA 746
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 535 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGCGTTTCTTACTGGTTGAACGTGA 594
Query 747 CTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTATCT 806
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 595 CTGTTCTTGGATTATACATGACGTTTTCTTCCAGCTGTAGCAAGAGCCGTGCAGCGATCT 654
Query 807 CCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATCTA 866
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 655 CCATGAGTTTGTTTAAAGGAATGAGAGAGTTTTTCCGGTTTGGAATCCCATCTGCGTCTA 714
Query 867 TGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAG-TCCTGCTCTCTGGTATTTTACCA 925
|||||||||| ||||||||||||||||||||| | | || | |||||||| || ||||||
Sbjct 715 TGATTTGCCTCGAGTGGTGGTCATTCGAATTTCT-GCTCTTACTCTCTGGGATCTTACCA 773
Query 926 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACA--CAATCCTCCTTGT 983
|||||||||||||||||||||||||||||| ||||||| |||||| ||| | || | ||
Sbjct 774 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAATCTGTCTATCAACAATCAA-CATCGT-GT 831
Query 984 ACCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAG 1043
||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 832 ACCAAATAGCAGATAGTCTCGCCGCAGCAGCAAGTACAAGAGTTGCAAACGAATTAGGAG 891
Query 1044 CTGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAG 1103
||||||| || ||||||||||||||||||||||| |||| |||||| || ||||||||||
Sbjct 892 CTGGAAAACCAAAACAAGCTCGAATGGCGGTTTATACAGTGATGGTCATTACAGGTGTAG 951
Query 1104 AATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATT-TGGTTACCTATTC 1162
||||||||||||| | |||||||| ||| |||||||||| || || ||| ||| |||||
Sbjct 952 AATCAATAATGGTCAGCGCAATAGTTTTTAGTGCAAGAAACGT-TTATGGATACATATTC 1010
Query 1163 AGTTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCG 1222
|| |||||||| ||||| || | ||||||| ||||||||||||| || || ||||||||
Sbjct 1011 AGCTCTGAAACCGAAGTAGTGGTTTATGTAAGATCAATGGCTCCATTGGTTGCTTTATCG 1070
Query 1223 GTCATATTCGATGCCCTTCA 1242
|||||||||||||| |||||
Sbjct 1071 GTCATATTCGATGCTCTTCA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5