BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71350.1 Length=1933 Score E Sequences producing significant alignments: (Bits) Value Ahg926497 jgi|Araly1|926497|scaffold_202058.1 2699 0.0 > Ahg926497 jgi|Araly1|926497|scaffold_202058.1 Length=1852 Score = 2699 bits (1461), Expect = 0.0 Identities = 1732/1859 (93%), Gaps = 33/1859 (2%) Strand=Plus/Plus Query 3 GACGACTACAAGCGAACATAATGTTTAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 62 ||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 2 GAC-ACTACAGGCGAACAGAATGTTCAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 60 Query 63 TCTCCGGCGCTGACCGGAAAAAACTCCGTCGCACCGTCCGAAATAGGCTTCCCCTTCTTA 122 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 61 TCTCCGGCGCTGACCGGAAAAAACTCCGCCGCACCGTCCGAAATAGGCTTCCCCTTCTAA 120 Query 123 CCGATGAACTCCTCGACGCAATTCTTCCTCCCAAGGTCGAGATTACACTTTCCAAGTTTC 182 |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 121 CCGATGAACTCCTCGACGCAATCCTTCCTCCCAAGGTCGAGATAACTCTTTCCAAGTTTC 180 Query 183 AGAATCGAGTTATTGTTTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 242 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAATCGAGTTCTTGTCTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 240 Query 243 GAAGAGGAACTGAGATTTTCCCCACAGTTTTTGCTCTGTGGGAGGCTCCTGAAATGTTAC 302 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 GAAGAGGGACTGAGATATTCCCCACAGTTTTTGCTCTCTGGGAGGCTCCTGAAATGTTAC 300 Query 303 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGTTATATTATAGGCGGTGCAGATTTGA 362 |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| Sbjct 301 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGGTATGTTTTAGGCGGTGCAGATTTGA 360 Query 363 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTATCCTTCTTTCTCTGCTGGAGAAATAT 422 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTTTCCTTCTTTCTCTGCTGGAGAAATAT 420 Query 423 GGGCTGTCAAAGTTCCTGGAAATCTAGCACCTATTGCGGTTGGGTGTACCACAATGAGTA 482 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 421 GGGCTGTCAAAGTTCCTGGAAATCTGGCACCTATTGCGGTTGGGTGTACTACAATGAGTA 480 Query 483 GTGAAGAAGCTCGTAAAGCAGGTTTACGTGGGAAGGCTTTAAGGATAACTCATTATTACC 542 |||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 481 GTGAAGAAGCCCTTAAAGCAGGTTTGCGTGGGAAGGCTTTACGGATAACTCATTATTACC 540 Query 543 GTGACTTCCTATGGGAATCAGCTGAGGGGCATTATGTTCCAAATGCGGGGTTTATGGAGG 602 |||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 541 GTGACTTCCTTTGGGAATCAGCTGAGGGGCACTACGTTCCAAATGCTGGTTTTATGGAGA 600 Query 603 ATGTGGTCATGGAGGACCCATCGTACCTTGCTCCTGGTTCAGGTGAAGATATTTTAGA-- 660 |||| ||||||||||||||||||||||||||| ||||||||| |||||| || | ||| Sbjct 601 ATGTTGTCATGGAGGACCCATCGTACCTTGCTTCTGGTTCAGTTGAAGAAATCTCAGACT 660 Query 661 ---CA-CT--T-CT--G-CAAGCACCGGAAATGAAGAAGATGAATCTGCT-CTG-G-A-A 706 || || | || | |||||| | ||||| ||||||||||||| | || | | | Sbjct 661 CTTCAGCTGGTCCTCAGACAAGCA-CAGAAAT--TGAAGATGAATCTGGTGATGTGAATA 717 Query 707 ACA----G-CTTCAACATCGGCTGCGGATGCTAAGAATGATGCTGAAGTACATGTCGTTG 761 | | | ||||||| || | | ||||||||||||||||| |||||| |||||| |||| Sbjct 718 ATATTGGGCCTTCAACCTCTGTTACGGATGCTAAGAATGATACTGAAGAACATGTGGTTG 777 Query 762 GGAGCATGAATGAGCT-ATACTTGGTAGATGATGTATGTGCTACTGAAACTAATACCGAC 820 |||||||||||||||| | |||| | |||||| || | ||||| |||| | ||||||||| Sbjct 778 GGAGCATGAATGAGCTGA-ACTTAGCAGATGACGTTTCTGCTAATGAAGCAAATACCGAC 836 Query 821 AAGCAGATTACTCTCTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGTCTTTTGCAA 880 ||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 837 AAGCAGAATATTCTGTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGCCTTTTGCAA 896 Query 881 GCATTGCATACAACACTAAAGGAGAAA-GACCTTCCCATCCCAGGAAGCACTCTATGGGC 939 ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| Sbjct 897 GCATTGCATACAACACTAAAGGA-AAAGGACCTTCCCATCCCAGGAAGTACTCTGTGGGC 955 Query 940 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 999 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 1015 Query 1000 TAAAAAGTTGTCAAAGTGGCTGCAATCTAAAGCGTCTGGTGGAATGATATCTGTTAAGGA 1059 ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| || Sbjct 1016 TAAAAAGCTGTCAAAGTGGCTGCAATCTAAAGCCTCTACTGGAATGATATCTGTTAAAGA 1075 Query 1060 AGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1119 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1076 AGACAAGCATAAGAAGGAGATTGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1135 Query 1120 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCCGAGTCTCCTGGAGAGCGCTCCAC 1179 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1136 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCTGAGTCTCCTGGAGAGCGCTCCAC 1195 Query 1180 -GGCGCAAGCTCAGTCAGAGAAAGGGCTTGAAATTATAGAGGTCTATAAATCAAGCATAC 1238 || ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| Sbjct 1196 AGG-GCAAGCTCAGTCAGAGAAAATGCTTGAAATCATAGAGGTCTATAAACCAAGCATAC 1254 Query 1239 ACAATAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1298 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 ACAACAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1314 Query 1299 AAGCCACTGACGTTGTGTTCAAATACATTGAGAAGGAAAATCTAGTAAAGCCAACAAACA 1358 |||||||||| |||||||||| |||||| |||||||||||||| ||||||||| |||||| Sbjct 1315 AAGCCACTGATGTTGTGTTCAGATACATCGAGAAGGAAAATCTGGTAAAGCCAGCAAACA 1374 Query 1359 AATCAATGGTGGTGTTGGATCCGATACTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1418 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1375 AGTCAATGGTGGTGTTGGATCCGATATTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1434 Query 1419 AGGGATCGGCATATCCGTCAGAGATCCACAAAAAGGATGTTGGGTCGACATTTGTAGGTA 1478 ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | Sbjct 1435 AGGGATCGGCATATCCGTCAGAGATTCACAAAAAGGATGTTGGATCGACGTTTGTAGGGA 1494 Query 1479 GAATGCAGCCTAATCACGTAGTGATGAGAGGAGGCGGTGAACCCGTGGTTCGTAAAGGAG 1538 | |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 1495 GGATGCAGCCTAATCACGTAGTCATGAGAGGCGGTGGTGAACCCGTGGTTCGTAAAGGAG 1554 Query 1539 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACCAAGG 1598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1555 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACAAAGG 1614 Query 1599 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1674 Query 1659 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1734 Query 1719 TTCAAGGAGGTGTGATTGATAACCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1778 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1735 TTCAAGGAGGTGTGATTGATAATCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1794 Query 1779 AGAGATACATCGAAGTTCTTGATAAGACTAG-AAAGTGAATGGttttttctatttcatt 1836 |||||||||| |||||||||||||||||||| ||| ||| | ||||||||| ||||||| Sbjct 1795 AGAGATACATTGAAGTTCTTGATAAGACTAGGAAA-TGATTTGTTTTTTCTTTTTCATT 1852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72638097215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5