BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71360.1
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339371 jgi|Araly1|339371|fgenesh1_pg.C_scaffold_2001470 3014 0.0
Ahg335524 jgi|Araly1|335524|fgenesh1_pg.C_scaffold_1002089 981 0.0
> Ahg339371 jgi|Araly1|339371|fgenesh1_pg.C_scaffold_2001470
Length=2001
Score = 3014 bits (1632), Expect = 0.0
Identities = 1890/2010 (94%), Gaps = 36/2010 (2%)
Strand=Plus/Plus
Query 207 GAGACGAGGTAGATCGTCGGAATTTCATCGACCGGGTTTCATTAGATCGGATACTCATCG 266
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 11 GAGACGAGGTAGATCGTCGGAATTTCATCGACCGGGTTTCATTAGATCGGAGACTCATCG 70
Query 267 GAGACGTCGCCGTTGAAAAGGGTTTTGTTACGAAGAA-G----C----CTTC--CTT--T 313
||||||||| |||||||||||||||||| ||| |||| | | |||| ||| |
Sbjct 71 GAGACGTCGGCGTTGAAAAGGGTTTTGTCACGGAGAAGGTTCCCGAATCTTCTTCTTCCT 130
Query 314 TCGGTTTGTCTTCCTCAATCACCGATTCGCTTCTCAGGTGTGA-ACAGTATATTAAGTTT 372
||||||||||||| |||||| ||||||||||||||| || | | ||| || || | ||
Sbjct 131 TCGGTTTGTCTTCTTCAATCTCCGATTCGCTTCTCA-GT-TTATACA--AT-TT-TGCTT 184
Query 373 TTGTTTGGTG-ATCTGATCT-TATTGGTTGGATGTGAAATGCAAAGATCACGGAGAGCTC 430
| | || ||| ||||||| | | | ||| | || || | ||||||||||||||||
Sbjct 185 TAG-TT-GTGAATCTGATGTGCA-TCGTT--A--TG-AA--C--AGATCACGGAGAGCTC 232
Query 431 TTCTGGTTAGAAGAAGAGTTTCTGAGACTACTTCTAATGGAAGGAATCGCTTCTACAAAG 490
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 TTCTGGTTAGAAGAAGAGTTTCTGAGACTACTTCTAATGGAAGGAATCGATTCTACAAAG 292
Query 491 TTTCATTGTCTTTGGTTTTTCTCATATGGGGGCTTGTCTTCTTATCTACATTGTGGATCA 550
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 293 TTTCATTGTCTCTGGTTTTTCTCATATGGGGTCTTGTCTTCTTATCTACATTGTGGATCA 352
Query 551 GTCATGTTGATGGTGACAAAGGTAGATCTTTAGTGGATTCAGTTGAAAAAGGTGAACCGG 610
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 353 GTCATGTTGATGGAGACAAAGGTAGATCTTTAGTGGATTCAGTTGAAAATGGTGAACCAG 412
Query 611 ATGATGAAAGGGCAGATGAGACAGCTGAGTCTGTTGATGCAACATCACTAGAGTCTACCT 670
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 413 ATGATGAAAGGGCAGATGAGACAGCTAAGCCTGTTGATGCACCATCACTAGAGTCTGCCT 472
Query 671 CTGTTCATTCTAATCCTGGA-TTGAGTTCGGATGTTGATATAGCTGCAGCCGGAGAAAGT 729
|||||||||||| |||| || |||||| |||||||||||||||||||||||||||||| |
Sbjct 473 CTGTTCATTCTACTCCT-GATTTGAGTCCGGATGTTGATATAGCTGCAGCCGGAGAAATT 531
Query 730 AAAGGCTCAGAAACCATCTTGAAGCAATTAGAAGTCGATAACACAATCGTTATCGTAGGA 789
|||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||
Sbjct 532 GAAGGCTCAGAAACCATATTGAAGAAAATAGAAGTCGATAACACAATCGTTATCGCAGGA 591
Query 790 AATGTTACAGAAAGCAAAGACAACGTGCCTATGAAGCAAAGTGAGATAAATAATAACACA 849
|| ||||||||||||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 592 AACGTTACAGAAAGCAAAGACATTGAGTCTATGAAGGAAAGTGAGATAAATAATAACACA 651
Query 850 GTTCCAGGGAATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTT 909
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTCCAGGGGATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTT 711
Query 910 CCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTAGAGACAAATCTTTGTCA 969
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 712 CCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCTATTTCTAGAGACAAATCTTTGTCA 771
Query 970 GGCCAAGTAACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGCA 1029
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GGCCAAGTCACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGCA 831
Query 1030 GCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAGC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAGC 891
Query 1090 ATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACTGAAGGGAAGTTC 1149
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 892 ATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACCGAAGGAAAGTTC 951
Query 1150 GTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCGAG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCGAG 1011
Query 1210 CATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGGACCTTGGTTTACCCAACTGAT 1269
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1012 CATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGCACCTTGGTTTACCCGACTGAT 1071
Query 1270 ACGTGGGTTCATCTAGGGAATTTCACGGCTTTAAACATGAAGCACGAGCAGAACTTTACA 1329
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ACGTGGGTTCATCTAGGGAACTTCACGGCTTTAAACATGAAGCACGAGCAGAACTTTACA 1131
Query 1330 TTTGCAGATCCCAAATGGGTGAGATATCTAAAGCTAAACTTGCTAAGCCATTACGGTTCA 1389
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1132 CTTGTAGATCCCAAATGGGTGAGATATCTAAAGCTAAACCTGCTAAGCCATTACGGTTCA 1191
Query 1390 GAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCTGTGGAGCGAATG 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCTGTGGAGCGAATG 1251
Query 1450 CTGGAGGATTTGATATCTATCCAAGACAAGAACATATTGAAACTCCAAGAAGGAGACACT 1509
||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1252 CTGGAGGATTTGATATCAATCCAAGACAAGAACATATTGAAACCCCAAGAAGGAAACACT 1311
Query 1510 GAGCAGAAAGAGAAGAAGACAATGCAAGCAAAAGAGTCCTTCGAAAGCGATGAAGACAAG 1569
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1312 GAGCAGAAAGAGAAGAAGACAATAAAAGCAAAAGAGTCCTTTGAAAGCGATGAAGACAAG 1371
Query 1570 AGTAAACAGAAGGAGAAGGAACAAGAAGCCTCACCAGAGAATGCGGTTGTGAAAGATGAA 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AGTAAACAGAAGGAGAAGGAACAAGAAGCCTCACCAGAGAATGCGGTTGTGAAAGATGAA 1431
Query 1630 GTATCACTTGAGAAAAGAAAGCTGCCAGATCCGGTGGAAGAGATAAAACATCAACCAGGA 1689
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GTATCAATTGAGAGAAGAAAGCTGCCAGATCCGGTGGAAGAGATAAAACATCAACCAGGA 1491
Query 1690 AGCAGAATGCCGGGGGACACTGTCTTGAAGATACTGATGCAGAAGATAAGGTCGCTGGAC 1749
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1492 AGCAGAATGCCGGGGGACACTGTCCTGAAGATACTGATGCAGAAGATAAGGTCGCTGGAC 1551
Query 1750 GTGAGCTTATCAGTTCTTGAGAGTTACTTGGAGGAACGGAGCTTGAAATACGGGATGATA 1809
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1552 GTGAGCTTATCAGTTCTTGAGAGTTACTTGGAGGAGCGGAGCTCGAAATACGGGATGATA 1611
Query 1810 TTCAAGGAGATGGACCTGGAGGCgagcaagagagagaaggaggtggagactatgagacta 1869
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTCAAGGAGATGGACGTGGAGGCGAGCAAGAGAGAGAAGGAGGTGGAGACTATGAGACTG 1671
Query 1870 gaggtagaaggaatgaaggagagggaagagaatacgaagaaagaggcgatggagatgaga 1929
||||||| |||||||||||||| ||||||| ||||||||| ||||| |||||||||||
Sbjct 1672 GAGGTAGCGGGAATGAAGGAGAGCGAAGAGAGTACGAAGAAGGAGGCCATGGAGATGAGG 1731
Query 1930 aagTGGCGGAtgagagtggagacagagcttgagaaggctgagaatgagaaagagaaagtg 1989
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GGGTGGCGTAGGAGAGTGGAGACAGAGCTTGAGAAGGCTGAGAATGAGAAAGAGAAAGTG 1791
Query 1990 aaggagaggttagagCAAGTGTTGGAAAGACTGGAGTGGATGGAGAAGAAAGGTGTGGTT 2049
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1792 AAGGAGAGGTTAGAGCAAGTGTTGGAAAGAATGGAGTGGATGGAGAAGAAAGGTGTGGTT 1851
Query 2050 GTGTTCACAATCTGTGTCGGGTTTGGGACTATAGCAGTTGTAGCCGTGGTTTTTGGTATG 2109
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1852 GTGTTCACAATCTGTGTCGGGTTTGGGGCTATAGCAGTTGTAGCCGTGGTTCTTGGTAAA 1911
Query 2110 GGGATAGTTCGAGCAGAGAAGCAAGGTGGCTTGGCTTGGCTTCTGTTATTGATAAGCTCC 2169
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1912 GGGACAGGTCGAGCAGAGAAGCCAGGTGGCTTGGCTTGGCTTCTGTTATTGATAAGCTCG 1971
Query 2170 ACATTCGTTATGTTCATTTTGTCACTTTGA 2199
||||||||| ||||||||||||| ||||||
Sbjct 1972 ACATTCGTTCTGTTCATTTTGTCTCTTTGA 2001
> Ahg335524 jgi|Araly1|335524|fgenesh1_pg.C_scaffold_1002089
Length=1905
Score = 981 bits (531), Expect = 0.0
Identities = 1163/1458 (80%), Gaps = 84/1458 (6%)
Strand=Plus/Plus
Query 790 AATGTTACAGAAAGCAAAGACAACGTGCCTATGAAGCAAAGTGAGATAAATAATAACACA 849
|||| |||||||||||||||||| ||| | ||||||||| | || | || | || |||
Sbjct 484 AATGATACAGAAAGCAAAGACAATGTGTTTTTGAAGCAAAATCAGGTGAA-CA-AA-ACA 540
Query 850 GTTCCAGGGAATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTT 909
| ||||||||||||||| |||| || || ||||||| ||||||| | |||||||||||||
Sbjct 541 GATCCAGGGAATGATACTGAGATCAATGCTTCAAAGGTTGATCAACCATCTCGTGCTGTT 600
Query 910 CCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTAGAGACAAATCTTTGTCA 969
|| ||||||||||||||||| |||||||| ||||||||||||||| ||||||| || ||
Sbjct 601 CCACTTGGCCTTGATGAGTTTAAGAGCAGGGCGTCCAATTCTAGAAACAAATCGTTATC- 659
Query 970 GG-CCAAGTAACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGC 1028
|| || || | ||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 660 GGATCAGGTCAGTGGTGTTATTCACAGGATGGAGCCTGGAGGGAAAGAGTACAATTATGC 719
Query 1029 AGCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAG 1088
||||||||||||||||||||||| | ||||| ||||||||||||||||| ||| ||||
Sbjct 720 CTCTGCTTCAAAAGGTGCAAAGGTCCTGTCTTCCAACAAGGAAGCAAAAGGGGCTCCAAG 779
Query 1089 CATCATATGCCGGGACAAAGACAAGTATCTC-CGAAACCCGTGTTCTACTGAAGGGAAGT 1147
|||| || |||||||||| |||||||| ||| ||| ||| |||||||||||||| || |
Sbjct 780 CATCCTAAGCCGGGACAATGACAAGTACCTCAGGAATCCC-TGTTCTACTGAAGGTAAAT 838
Query 1148 TCGTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCG 1207
| |||||| ||||||||||||||||||| ||||| || || |||||||| || |||||||
Sbjct 839 TTGTTGTCGTAGAACTTTCAGAAGAAACATTGGTAAATACCATCAAGATCGCGAATTTCG 898
Query 1208 AGCATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGGACCTTGGTTTACCCAACTG 1267
|||||||||||||||||||||| || ||| || || || ||| ||||||| || ||||
Sbjct 899 AGCATTACTCTTCCAATCTGAAAGAGTTTCAGCTTCAAGGCACCCTGGTTTATCCGACTG 958
Query 1268 ATACGTGGGTTCATCTAGGGAAT-TTCACGGCTTTAAACATGAAGCACGAGCAGAACTTT 1326
|||| ||||||||| | ||||| |||||||||| |||| ||||||| |||||||||||
Sbjct 959 ATACCTGGGTTCATAT-GGGAAACTTCACGGCTTCAAACGTGAAGCATGAGCAGAACTTC 1017
Query 1327 ACA-TT-TGCAGATCCCAAA-TGGGTGAGATATCT-AAAGCTAAACTTGCTAAGCCATTA 1382
||| || | | || || ||| ||||||||||| || |||||||||||| ||||| |||||
Sbjct 1018 ACACTTCT-C-GAGCC-AAAGTGGGTGAGATA-CTTAAAGCTAAACTTTCTAAGTCATTA 1073
Query 1383 CGGTTCAGAATTCTACTGCACCTTGAGTTT-ACTAGAAGTCTATGGAGTGGACGCTGTGG 1441
||||||||||||||||||||||||||||| | |||||||||| |||||||| || || |
Sbjct 1074 TGGTTCAGAATTCTACTGCACCTTGAGTTTGA-TAGAAGTCTACGGAGTGGATGCCGTTG 1132
Query 1442 AGCGAATGCTGGAGGATTTGATATCTATCCAAGACAAGAACAT---ATTGAAACTCCA-A 1497
| || ||||||||||||||||||||| |||| ||||| || | ||| ||| ||| |
Sbjct 1133 AACGGATGCTGGAGGATTTGATATCTGTCCAGGACAACAAAAACGCATTCAAAA-CCAGA 1191
Query 1498 GAAGGAGACACTGAGCAGAAAGAGAAGAAGACAATGCAAGCAAA-AGAGTCCTTCGAAAG 1556
|| ||||| ||||||||| |||||| | | |||| ||||| |||||| || ||| |
Sbjct 1192 GAGGGAGATTTTGAGCAGAAGGAGAAG--GT-AGTGCA-GCAAACAGAGTCATTAGAAGG 1247
Query 1557 CGATGA-AGA-CAAG-AGTAA-ACAG-A-AG-GAGAAGGAACAAG-AAGCCTCACCAGAG 1608
||||| || | | || | || | | || ||||| || | | ||||| ||||||||
Sbjct 1248 AGATGATAGTGCTGGTAGGAGCAC-GCACAGAGAGAACGAG-AGGGAAGCCCCACCAGAG 1305
Query 1609 AATGCGGTT-GTGAAAGA-TGAAGTATCACTTGAGAA-A--AG-AA-A-GCT-GCCAGAT 1659
||| | || | || || ||||| |||| | | ||| | || || | ||| || |||
Sbjct 1306 AATATG-TTAGCCAA-GACTGAAGCATCAATGGCGAAGAGTAGTAATAAGCTAGC-AGAG 1362
Query 1660 CCGGTGGAAGAGATAAAACATCA--A-CCAGGAAGCAGAATGCCGGGGGACACTGT-CTT 1715
|| ||||||||||| | ||||| | ||||||||||||||||| |||||||| || ||
Sbjct 1363 CCCGTGGAAGAGATGAGGCATCATCAGCCAGGAAGCAGAATGCCAGGGGACACAGTGCT- 1421
Query 1716 GAAGATACTGATGCAGAAGATAAGGTCGCTGGACGTGAGCTTATCAGTTCTTGAGAGTTA 1775
||||||||||||||||||| ||||||| ||||| ||| | |||| ||||| ||||| ||
Sbjct 1422 GAAGATACTGATGCAGAAGTTAAGGTCATTGGACTTGAACCTATCGGTTCTAGAGAGATA 1481
Query 1776 CTTGGAGGAACGGAGCTTGAA-ATACGGGATGATATTCAAGGAGATGGACC-TGGAGGCg 1833
||| ||||||| || | || |||||||| ||||||||||||||||||| || || |
Sbjct 1482 CTTAGAGGAACTGAACAC-AAGATACGGGAACATATTCAAGGAGATGGACCGTGAAG-C- 1538
Query 1834 agcaa-gagagagaaggaggtggagactatgagactagaggtagaaggaatgaaggagag 1892
|| |||||| |||| | | | |||| ||||||| || | ||||| |||||||||||
Sbjct 1539 AGGTGTGAGAGAAAAGGCGATTGTGACTTTGAGACTTGACTTGGAAGGTATGAAGGAGAG 1598
Query 1893 ggaagaga-atacgaagaaagaggc-gatggagatgagaa-agTGGCGGAtgagagtgga 1949
| |||||| | | | || || || || ||| |||| || ||||||| | |||||||||
Sbjct 1599 GCAAGAGAGA-ATGGTGAGTGAAGCAGA-GGAAATGA-AAGAGTGGCGAAAGAGAGTGGA 1655
Query 1950 gacagagcttgagaaggctgagaatgagaaagagaaagtgaag-gagagg-ttagagCAA 2007
| ||| | | ||||| || ||||| |||||||| ||| ||| ||||| || ||| ||
Sbjct 1656 GGCAGCGATGGAGAAAGCAGAGAAAGAGAAAGA-AAACACAAGAGAGAGTCTT-GAGGAA 1713
Query 2008 GTGTTGGAAA-GACTGGAGTGGATGGAGAAGAAAGG-TGTGGTTGTGTTCACAATCTGTG 2065
|| | ||| |||| |||||||||||||||||||| | | | |||||||| | |||
Sbjct 1714 GTAA-GTAAAAGACTTGAGTGGATGGAGAAGAAAGGCT-TAATGGTGTTCACCGTGTGTC 1771
Query 2066 TCGGGTTTGG-GACTATAGCAGTTGTAGCCGTGGTTTTTGGTATGGGGATAGTTCGAGCA 2124
| |||||||| | || | || ||| | || || || | ||| |||| | || |||||||
Sbjct 1772 TAGGGTTTGGCG-CTCTCGCGGTTATTGCAGTTGTGGTCGGTGTGGGAACAGGTCGAGCA 1830
Query 2125 GAGAAG-CAAGGTGGCTTGG-CTTGGCTTCT-GTTATTGATAAGCTCCACATTCGTTATG 2181
|||||| | ||||| | || ||||||| || |||||| || ||||| |||||| |||||
Sbjct 1831 GAGAAGACC-GGTGG-TGGGGCTTGGCT-CTTGTTATTAATTAGCTCAACATTCATTATG 1887
Query 2182 TTCATTTTGTCACTTTGA 2199
||| ||||||| ||||||
Sbjct 1888 TTCGTTTTGTCTCTTTGA 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5