BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71490.1 Length=2921 Score E Sequences producing significant alignments: (Bits) Value Ahg476279 jgi|Araly1|476279|fgenesh2_kg.2__1409__AT1G71490.1 3570 0.0 Ahg943111 jgi|Araly1|943111|scaffold_603655.1 597 1e-169 Ahg472526 jgi|Araly1|472526|fgenesh2_kg.1__2480__AT1G22830.1 414 2e-114 > Ahg476279 jgi|Araly1|476279|fgenesh2_kg.2__1409__AT1G71490.1 Length=2721 Score = 3570 bits (1933), Expect = 0.0 Identities = 2338/2531 (92%), Gaps = 38/2531 (2%) Strand=Plus/Plus Query 416 AGTCTTGTT-CCAAGAACTTTCC-AAACCCACATTGAACCAATGCTGAGTGAGAGTCTTT 473 ||||| || |||||||| | || ||||||||| |||| ||||||||| ||||||||||| Sbjct 204 AGTCTAATTCCCAAGAAC-TCCCAAAACCCACAATGAATCAATGCTGATTGAGAGTCTTT 262 Query 474 TCAAATCTCTTGGACATTTGGCCAGCCACGGTCATTTGCACGACGCTTTCAAAACGTTTT 533 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 TTAAATCTCTTGGACATTTGGCCAGCCACGGTCATTTGCACGACGCTTTCAAAACGTTTT 322 Query 534 CTCTTCTTCGTCTTCAATC-T-T-CTTCTGCAGTTTCAGATGACCTCGTTTTGCATTCCG 590 ||||||||||||||||||| | | ||||||||||||||| ||| | ||||||||||||| Sbjct 323 CTCTTCTTCGTCTTCAATCTTCTCCTTCTGCAGTTTCAGGTGATGTTGTTTTGCATTCCG 382 Query 591 CGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCATTTTTAGCAGGGG-TGCAAGTT 649 ||||||||||||||||||||||||||||||||| ||||||| | || |||| ||||| || Sbjct 383 CGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCTTGCATTTGT-GCCGGGGCTGCAAATT 441 Query 650 CACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTG-TGTTAGTCCCAAAGCTGGT 708 |||||||||||| ||||||| ||||| ||||||||||||| | || |||||||||||||| Sbjct 442 CACGCTCACTGTGTTTCGTCCGGTGTGGAATATCACTCTGCT-TTGGTCCCAAAGCTGGT 500 Query 709 TACCTTTTACTCTGCTTTCAATCTCCACAATGAAGCTCAATCGATTATTGAGAACTCTGA 768 ||| |||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || Sbjct 501 TACTTTTTACTCTGCTTTTAATCTTCACAGGGAAGCTCAATCGATTAATGAGAACTCAGA 560 Query 769 CATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTT 828 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 TATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTT 620 Query 829 TGAGGAGGTTATTGCTGCTTACAAGAGAATGGTGAGCAAGGGAATCCGACCCGATGCCTT 888 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 621 TGAGGAGGTTGTTGCTGCTTACAAGAGAATGGTGAGCAAGGGAATTCGACCCGATGCCTT 680 Query 889 CACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGACGTTGCCTTTGGAAGGGT 948 |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || Sbjct 681 CACTTATCCGTCTGTTCTCAAGGCCTGTGGTGAAACACTTGACGTTGCCTCTGGAAGAGT 740 Query 949 GGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTTGTATGTTTGTAATGCATT 1008 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 741 GGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTGCAGCTTGTATGTTTGCAATGCATT 800 Query 1009 GATCTCTATGTATAAAAGGTTTAGAAATATGGGTATTGCTCGGAGGTTGTTTGATCGA-A 1067 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | | Sbjct 801 GATCTCTATGTATAAAAGGTTTGGAAATGTGGGTATTGCTCGGAGGTTGTTTGATC-ATA 859 Query 1068 TGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAACTGTTATGCTTCGGAAGGCA 1127 ||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| Sbjct 860 TGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTTATAAACTGTTATACTTCGGTAGGCA 919 Query 1128 TGTGGAGTGAAGCGTTTGAGCTTTTCGATAAAATGTGGTTTTCAGGTGTTGAGGTCAGTG 1187 ||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| Sbjct 920 TGTGGAGTGAAGCGTTTGAGCTTTTTGATAAAATGAGGTTCTCAGGTGTTGAATTCAGTG 979 Query 1188 TCATAACTTGGAATATTATTTCTGGAGGTTGTTTGCAAACAGGAAATTATGTAGGAGCTT 1247 |||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||| Sbjct 980 TCATAACTTGGAATATTATTTCTGGAGGTTATTTGCATACAGGAAACTATGCAGGAGCTT 1039 Query 1248 TGGGTTTGATCTCTAGGATGAGAAATTTTCCTACGAGCTTAGATCCTGTGGCTATGATTA 1307 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1040 TGGGTTTGATCTCTAGGATGAGAAATTTCCCCACGAGCTTAGATCCTGTGGCTATGATTA 1099 Query 1308 TTGGTTTGAAGGCTTGCTCTCTCATAGGAGCAATACGATTGGGAAAAGAGATTCACGGTC 1367 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1100 TTGGTTTGAAGGCTTGCTCACTCATAGGAGCAATACGATTGGGAAAAGAGATTCACGGTC 1159 Query 1368 TTGCTATTCACAGTTCTTATGATGGGATTGACAATGTTCGAAACACGTTGATCACAATGT 1427 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1160 TTGCTATTCACCGTTCTTACGATGGGATTGACAATGTTCGAAACACGTTGATCACAATGT 1219 Query 1428 ACTCAAAATGCAAAGACCTTAGGCACGCCTTAATAGTGTTTCGACAGACTGAAGAAAATA 1487 ||||||||||| | ||||||||| ||||||| |||||||||| | ||||||||||||||| Sbjct 1220 ACTCAAAATGCGATGACCTTAGGAACGCCTTTATAGTGTTTCAAAAGACTGAAGAAAATA 1279 Query 1488 GTTTGTGTACTTGGAACTCTATCATTTCCGGTTATGCGC-AGCTGAACAAATCAGAAGAA 1546 |||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||| Sbjct 1280 GTTTGTGTACTTGGAACTCTATTATTTCCGGTTATGCGCAAG-TGAATAAATCAGAAGAA 1338 Query 1547 GCCTCTCACCTGCTGAGGGAGATGTTGGTTGCTGGCTTTCAGCCAAATTCCATTACACTA 1606 |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1339 GCCTCTTACCTGCTGAGGGAGATGTTGCTTGCTGGCTTTCAGCCAAATTTCATTACACTT 1398 Query 1607 GCAAGCATTCTCCCTCTTTGTGCTCGGATTGCAAACCTGCAACATGGAAAAGAGTTTCAT 1666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1399 GCAAGCATTCTCCCTCTTTGTGCTCGGATTGCAAACCTGCAACATGGAAAAGAGTTTCAT 1458 Query 1667 TGCTACATCCTGAGGCGCAAGTGCTTCAAGGACTATACAATGCTGTGGAACTCCCTTGTT 1726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1459 TGCTACATCCTGAGGCGCAAGTGCTTCAAGGACTATACAATGCTGTGGAACTCCCTTGTT 1518 Query 1727 GATGTTTATGCAAAATCGGGAAAGATTGTAGCTGCAAAGCAAGTATCTGATTTGATGAGC 1786 ||||||||||||||||| ||||| ||||||||||| |||||||||||| || |||||||| Sbjct 1519 GATGTTTATGCAAAATCAGGAAAAATTGTAGCTGCGAAGCAAGTATCTAATCTGATGAGC 1578 Query 1787 AAAAGAGACGAAGTAACATACACTTCCTTGATAGATGGATACGGAAATCAAGGTGAAGGG 1846 ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1579 GAAATAGACGAAGTAACGTACACTTCCTTGATAGATGGATACGGAAATCAGGGTGAAGGG 1638 Query 1847 GGAGTAGCCTTGGCCCTGTTCAAGGAGATGACCAGATCTGGTATTAAACCTGACCATGTA 1906 |||| ||||||||||||||| | ||||||| ||||||||||||||||||||||| |||| Sbjct 1639 CGAGTTGCCTTGGCCCTGTTCGACGAGATGATCAGATCTGGTATTAAACCTGACCCTGTA 1698 Query 1907 ACCGTGGTTGCAGTTCTATCAGCCTGCAGTCATTCCAAGTTAGTCCATGAAGGTGAAAGG 1966 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1699 ACCATGGTTGCAGTTCTGTCAGCCTGCAGTCATTCCAAGTTAGTCCATGAAGGCCAAAGG 1758 Query 1967 CTGTTTATGAAGATGCAGTGTGAGTATGGTATACGTCCTTGTCTTCAACATTTTTCTTGT 2026 || ||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||| Sbjct 1759 CTATTTATGAAGATGCAGCCTAAGTATGGTATACGGCCTTGTCTTCAACACTTTTCTTGT 1818 Query 2027 ATGGTTGATCTCTATGGCAGAGCAGGTTTCCTAGCAAAAGCCAAAGACATAATTCACA-A 2085 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | Sbjct 1819 ATGGTTGATCTCTATGGCAGAGCGGGTTTCCTAGCGAAAGCCAAAGACATAATTCACAGA 1878 Query 2086 TATGCCATATAAGCCATCCGGTGCCACGTGGGCTACCCTACTGAACGCGTGTCACATCCA 2145 |||||| || |||||||||||||||| ||||| || ||||||||||| ||||||||||| Sbjct 1879 -ATGCCACATGAGCCATCCGGTGCCACATGGGCAACTCTACTGAACGCTTGTCACATCCA 1937 Query 2146 TGGGAACACACAGATTGGTAAATGGGCAGCAGAAAAGCTCCTGGAGATGAAGCCAGAGAA 2205 ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1938 CGGGAACACAGAGATTGGTAAATGGGCTGCAGAAAAGCTTTTGGAGATGAAGCCAGAGAA 1997 Query 2206 CCCGGGATACTACGTGTTAATTGCAAATATGTATGCAGCTGCTGGTTCTTGGAGCAAGCT 2265 |||||||||||| || || |||||||||||||||||| |||||||||||||||||||||| Sbjct 1998 CCCGGGATACTATGTATTGATTGCAAATATGTATGCAACTGCTGGTTCTTGGAGCAAGCT 2057 Query 2266 TGCTGAAGTGAGGACTATAATGAGGGACTTGGGTGTGA-AAAAGGATCCTGGCTGTGCTT 2324 |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| Sbjct 2058 TGCTGAAGTGAGGACTATCATGAGGGACTTGGGTGTGAGAAAAG-ATCCTGGGTGTGCTT 2116 Query 2325 GGATCGACACAGATTCTGGATTTTCACTGTTTTCGGTGGGGGACACATCAAGCCCT-GAA 2383 ||||| | ||||||||||| ||||||||||||| ||||||||||||||||| |||| || Sbjct 2117 GGATCAATACAGATTCTGGGTTTTCACTGTTTTTGGTGGGGGACACATCAAACCCTCGA- 2175 Query 2384 GCATGTAATACTTATCCTCTATTAGATGGACTGAATCAGCTGATGAAAGACAATGCTGGT 2443 |||| | || |||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 2176 GCATCTGATGCTTATCCTCTGTTAGATGGACTGAATCAGCTGATGAAAGACACTGCTGGT 2235 Query 2444 TATGCCATCAATAAGGTGCAAAGTTCAGATGAAGAACTTCTTCAAGAAATGGGATGAAGG 2503 ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| | Sbjct 2236 TATGCCATCAACGAGGAGCAAAGTTCAGATGAAGAACTTCTTCAAGAAATAGGATGAAAG 2295 Query 2504 TGAA----GA-G--CTGAGGATGATCAACTGGAGCTTTATTTAGTTAATAGCACATAGT- 2555 ||| | | |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 2296 TGACCCTCGTCGATCTGAGGATGATCAACTGGAGATTTATTTAGTTAATAGCACAT-GTT 2354 Query 2556 CTATATACGCCTGCATATCACCAGACTGAGAACAAGTTGGATACACATGACAAGTTCTAG 2615 ||||||||||||||| |||| ||||| || | |||||||||||| ||||||| |||||| Sbjct 2355 CTATATACGCCTGCACATCATCAGACCGACATGAAGTTGGATACATATGACAACTTCTAG 2414 Query 2616 TATATACATTAACTA-AAATTGGACAATGGTGGGG-ATTGCTGCGGAAGTATTTTTCCTA 2673 ||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 2415 TATATACATTAAC-ACAAATTGGACAATGGTGGGGGATTGCTGCCGAAGTATTTTTCCTA 2473 Query 2674 TATAACACAAAGAAAAC-TTATATT-GTGAGCTGATTCACTTCATCGAGCAAGAGCTTTG 2731 | || |||||||||||| || |||| |||||||||||||||||||| ||||| ||| || Sbjct 2474 TTTACCACAAAGAAAACCTT-TATTTGTGAGCTGATTCACTTCATCAAGCAAAAGCGTTA 2532 Query 2732 TAATGCCATCAGAATTGGTCGGCCAGTTGAGGAAATTTCTGCAGCAGCCAGGTAACTCCC 2791 || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2533 TAGTTACATCAGAATTGGTCAGCCAGTTGAGGAAATTTCTGCAGCAGCCAGGTAACTCCC 2592 Query 2792 TTTATAGCAGCCTGAATACACAAAATGCAAAAGCTGTTAAATCTT-CATTACCTCTGCAA 2850 |||||||||||||||| ||||||| |||||||| |||| ||| || |||||| ||||||| Sbjct 2593 TTTATAGCAGCCTGAAGACACAAA-TGCAAAAGATGTTGAAT-TTGCATTACGTCTGCAA 2650 Query 2851 TTTCAAACACATCCACACAATCAAAATTGATAGTAGCTCATGTTACCAGAACTGTTTCTC 2910 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2651 TTTCAAATGCATCCACACAATCAAAATTAATAGTAGCTCATGTTACCAGAACTGTTTCTC 2710 Query 2911 CAGGTTTGATT 2921 ||||||||||| Sbjct 2711 CAGGTTTGATT 2721 Score = 209 bits (113), Expect = 8e-53 Identities = 190/224 (85%), Gaps = 17/224 (8%) Strand=Plus/Plus Query 40 TCTTGTTGCGTTTTTTCGCGCGCATTCTTCCGCTTTGCTTTG-TTGTTCCAATATC--TC 96 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| || Sbjct 1 TCTCGTTGCGTTTTTTCGCGCGCATTCTTCCACTTTGCTTTGTTTGTTCCAATATCTATC 60 Query 97 TCTCTTACCTCTGTTTCGTT-ATTCTCAATC--ATATAGGTTCTGCTATGTATATACTCT 153 |||||||||| |||||| || |||||||||| |||||| |||||||||| ||||||||| Sbjct 61 TCTCTTACCTATGTTTCATTCATTCTCAATCATATATAGATTCTGCTATGGATATACTCT 120 Query 154 CAGCTCTTAGGGTTCAAATGTGTATATAGTATGGTTCAGCAATCAGCACACCACGTGTTC 213 | ||| || ||||| || |||||| | |||| || | | |||||||||||| Sbjct 121 CTGCTTTTCGGGTTTAAGTGTGTAGAAAGTA---TT--G------GTTCACCACGTGTTC 169 Query 214 GATGATATGCTTCAATGAAGTTTTCTCAACTTGTAGTCTTATTC 257 |||||||||||||||||||||||||||| |||||||||| |||| Sbjct 170 GATGATATGCTTCAATGAAGTTTTCTCACCTTGTAGTCTAATTC 213 > Ahg943111 jgi|Araly1|943111|scaffold_603655.1 Length=481 Score = 597 bits (323), Expect = 1e-169 Identities = 411/453 (91%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 438 AAACCCACATTGAACCAATGCTGAGTGAGAGTCTTTTCAAATCTCTTGGACATTTGGCCA 497 |||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||| |||| Sbjct 4 AAACCCACATTGAATCAATGCTGATTGAGAGTCTTTTTAAATCTCTTGGGCATTTAGCCA 63 Query 498 GCCACGGTCATTTGCACGACGCTTTCAAAACGTTTTCTCTTCTTCGTCTTCAA---TCTT 554 |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| Sbjct 64 GCCATGGTCATTTGCACGATGCTTTCAAAACGTTTTCTCTTCTCCGTCTTCAATCTTCTT 123 Query 555 CTTCTGCAGTTTCAGATGACCTCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCG 614 ||||||||||||||| |||| | |||||||| ||||||||||||||||||||| || | Sbjct 124 CTTCTGCAGTTTCAGGTGACGTTATTTTGCATAGCGCGGCTTCCCTTTTATCCGCGTGTG 183 Query 615 TTGATGTTCGTGCATTTTTAGCAGGGG-TGCAAGTTCACGCTCACTGTATTTCGTCGGGT 673 ||||||||||||||||| | || |||| ||||| ||||||| |||||| ||||||||||| Sbjct 184 TTGATGTTCGTGCATTTGT-GCCGGGGCTGCAAATTCACGCGCACTGTGTTTCGTCGGGT 242 Query 674 GTCGAATATCACTCTG-TGTTAGTCCCAAAGCTGGTTACCTTTTACTCTGCTTTCAATCT 732 |||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct 243 GTCGAATATCACTCTGCT-TTAGTCCCAAAGCTGGTTACTTTTTACTCTGCTTTTAATCT 301 Query 733 CCACAATGAAGCTCAATCGATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAA 792 |||| || ||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 302 TCACAGTGTAGCTCAATCTATTATTGAGAACTCAGACATTTTGCATCCCTTACCAAGGAA 361 Query 793 TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTATTGCTGCTTACAA 852 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 362 TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTGTTGCTGCTTACAA 421 Query 853 GAGAATGGTGAGCAAGGGAATCCGACCCGATGC 885 ||||||||| |||||| |||| |||||||||| Sbjct 422 GAGAATGGTTAGCAAGA-AATCTGACCCGATGC 453 > Ahg472526 jgi|Araly1|472526|fgenesh2_kg.1__2480__AT1G22830.1 Length=2335 Score = 414 bits (224), Expect = 2e-114 Identities = 536/685 (78%), Gaps = 27/685 (4%) Strand=Plus/Plus Query 576 TCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCA-TTT-TT 633 |||||||| |||| || ||||| |||||||| | || || | | || ||| | ||| || Sbjct 490 TCGTTTTGTATTCAGCAGCTTCTCTTTTATCTACCTGTGTGGGTTTTAGTG-AGTTTGTT 548 Query 634 AGCAGGGGTGCAAGTTCACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTGTGTT 693 | ||| |||| |||| ||||| ||||| || |||||| | || | | || |||| || Sbjct 549 -CCTGGGCAGCAAATTCATGCTCATTGTATCTCCTCGGGTTTGGATTTTGACCCTGTTTT 607 Query 694 AGTCCCAAAGCTGGTTACCTTT-TACTCTGCTTTCAATCTCCACAATGAAGCTCA-ATCG 751 ||||||||| |||||| |||| ||||||||||| ||||| | | |||||||| | | Sbjct 608 GGTCCCAAAGTTGGTTA-CTTTCTACTCTGCTTTTAATCTTCTTGACGAAGCTCAGA-CC 665 Query 752 ATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTAT 811 |||| ||||||||||||||||||||||||||| || ||||||||||| |||| ||||||| Sbjct 666 ATTACTGAGAACTCTGACATTTTGCATCCCTTGCCGTGGAATGTGCTTATTGATTCGTAT 725 Query 812 GCCAAGAACGAGCTTTTTGAGGAGGT-TATTGCTGCTTACAAGAGAATGGTGAGCAAGGG 870 | | ||| | | ||||| || || || ||| ||||||| ||||| |||| || || Sbjct 726 GTTAGGAATAAACGGTTTGAAGA-GTCGGTTTCTGTTTACAAGCGAATGATGAGTAAAGG 784 Query 871 AATCCGACCCGATGCCTTCACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGA 930 ||| | ||| |||| |||||||||||||||||||| || |||||||| | | ||| || Sbjct 785 AATTCAACCGGATGAATTCACTTATCCGTCTGTTCTCAAAGCTTGTGGAGCATTACTGGA 844 Query 931 CGTTGCCTTTGGAAGGGTGGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTT 990 |||| | ||| || ||||||||||| || | |||||||||||| ||| || |||||| Sbjct 845 TTTTGCATATGGGAGAGTGGTTCATGGCTCTGTTGAGGTTAGCTCTCACAGGTGCAGCTT 904 Query 991 GTATGTTTGTAATGCATTGATCTCTATGTATAAAAGGTTTAG-AAATATGGGTATTGCTC 1049 |||||| || ||||| ||||| |||||||||||||| ||| | ||| ||| | |||||| Sbjct 905 GTATGTCTGCAATGCGTTGATATCTATGTATAAAAGATTTGGTAAA-GTGGATGTTGCTC 963 Query 1050 GGAGGTTGTTTGATC-GAATGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAAC 1108 ||| |||||||| | | |||| |||||||||||||||||||||||||||||| || ||| Sbjct 964 GGAAATTGTTTGA-CAGGATGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTAATTAAC 1022 Query 1109 TGTTATGCTTCGGAAGG-CATGTGGAGTGAAGCGTTTGAGCTTTTCGATAA-AATGTGGT 1166 ||| || |||| ||||| | | | ||| |||| ||| ||||||| |||| || || | Sbjct 1023 TGT-ATACTTCTGAAGGAC-T-TCGAG--AAGCTTTTAAGCTTTTTGATATTAA-GTACT 1076 Query 1167 TTTCAGGTGTTGAGGTC-AGTGTCATAACTTGGAATATTATTT-CTGGAGGTTGTTTGCA 1224 | | ||||| || | | ||| | |||||||||| | ||| |||||||||||||||| Sbjct 1077 CT-CTGGTGTCGAAG-CGAGTATTGTAACTTGGAACAC-ATTAGCTGGAGGTTGTTTGCA 1133 Query 1225 AACAGGAAATTATGTAGGAGCTTTG 1249 |||||||||| ||||| |||||| Sbjct 1134 GGCAGGAAATTACGTAGGGGCTTTG 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110271259275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5