BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71500.1 Length=1242 Score E Sequences producing significant alignments: (Bits) Value Ahg476280 jgi|Araly1|476280|fgenesh2_kg.2__1410__AT1G71500.1 1613 0.0 > Ahg476280 jgi|Araly1|476280|fgenesh2_kg.2__1410__AT1G71500.1 Length=1208 Score = 1613 bits (873), Expect = 0.0 Identities = 1121/1232 (91%), Gaps = 51/1232 (4%) Strand=Plus/Plus Query 1 GGCTACCATTATTCTTCTTCTTCTTCGTTATCCAC-T-TCTCTCTCCTTTGTGTGGTCAA 58 ||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||| || Sbjct 1 GGCTACCATCGTTCTTCTTCTTTTTCGTTATCCACTTGTCTCTCTCCTTTGTGTGGTGAA 60 Query 59 ATGCATTTCCCTCCATTCTCTTACGCTTTCTCTCACTCTCGTCAATGGCGACCACCGCAT 118 |||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| Sbjct 61 ATGCATTTCCCTCCATTCTCTTTCGCTCTCTCTCACACTCGTCCATGGCGACCACCGCAT 120 Query 119 CTTCATCTCTCCCCCGTAATTACTCCTTCACAACTCCGCGACCT--T-CATCATTC-ATC 174 |||| |||||||| || ||||||||||||||| |||| || ||| | |||| ||| ||| Sbjct 121 CTTCGTCTCTCCCTCGAAATTACTCCTTCACACCTCCTCGTCCTCCTCCATC-TTCAATC 179 Query 175 CGAGGACCGCCATTAGCTAGAACGCTGCCTCTCTATCTCCGCCGTAACCGTCGAG-TAGC 233 || ||| || | | |||||||||| || ||||||||||||||||| || | |||| Sbjct 180 CGCGGA---CC--T-G---GAACGCTGCCGCTTTATCTCCGCCGTAACCGACG-GTTAGC 229 Query 234 TCTCACTTACCGATTGGACCAGAATTCGAAGCAGAGAA---GTGGTGGAAACGTAAGATG 290 | | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 230 TTTAACTTACCGATTGGACCAGAATTCGAAGCGGAGAAGTGGTGGTGGAAACGTAAGATG 289 Query 291 CGAGGCGACGGAGGTATCTTCTTCTTCTTCTGTATCCACACCTGGAAGGAATTGGGTGCC 350 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 290 CGAGGCGACGGAGGTATCTTCTTCTTCGTCTGTATCCACACCTGGAAGGAATTGGGTGCC 349 Query 351 GGTGGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTTATTCAAGACGATGA 410 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 350 GGTTGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTAATTCAAGACGATGA 409 Query 411 GACGATATTGTTGCTTTGGTATAAGAACGATGTTTTTGCAATTGAGAATCGTTCACCAGC 470 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || Sbjct 410 GACGATATTGTTGCTTTGGTATAAGAACGATGTGTTTGCTATTGAGAATCGTTCTCCTGC 469 Query 471 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 529 Query 531 GTGTCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 590 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 GTGCCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 589 Query 591 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTATACCCTGT 650 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 590 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTGTACCCTGT 649 Query 651 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGCGGGAAAACAGAGGCAGC 710 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 650 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGTGGGAAAACAGAGGCAGC 709 Query 711 TGCTGAGATCGTCTTCAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 770 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 TGCTGAGATTGTGTTTAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 769 Query 771 AGACGAGGTGAGAATGATTGTGGACGAGGGTTCTGAAGGATTTGGTTTCACGAAGAAGAA 830 ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 770 AGATGAGGTGAGAATGATTGTGGACGAGGGGTCTGAAGGATTTGGTTTCACGGTGAAGAA 829 Query 831 CGAAGTGATAAACGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTCGAGCT 890 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 830 CGAAGTGATAAATGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTTGAGCT 889 Query 891 ATTGACAGGTAAAGGTCTATTGAAAGGAACAGGGTTCTTGGACTTCCTTTACTCTGCTTC 950 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 890 ATTGACAGGTAAAGGTCTATTGAAGGGAACAGGATTCTTGGACTTCCTTTACTCTGCTTC 949 Query 951 AGATGCTTTCAAGTAGAGGTAATATCTTTGTTGGTCTGGTTTTGCTTGCCTCCTTTGTGC 1010 |||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||| Sbjct 950 AGATGCTTTCAAGTAGAGATAATATCATTGTTGGTCTGCTTTTGCTTGCCTCGTTTGTGC 1009 Query 1011 AGTTTGCCGAGAAACaaaaaaaaa-a-------aa--a---aC-C-ATGTAATAGTATAT 1055 |||||||||||||||||||||||| | || | || | |||| |||||||| Sbjct 1010 AGTTTGCCGAGAAACAAAAAAAAATACTTCCGGAACTACTCACACCATGTCTTAGTATAT 1069 Query 1056 AGAGATGGCTTTGCTCTGTCTTTCTTTGTGTTT-ACCC-CTTATACGAGATATTCTTTCT 1113 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 1070 AGAGATGGCTTTGCTCTGTCTTTGTTTGTGTTTTACCCTCTTATACGAGATATTCTTTCT 1129 Query 1114 TCTCCTTGAGTTCAAATTATAATCTTCAAGCTTTCCCACTATCTTTTGTATTTGACATAC 1173 ||| | ||| ||||| || ||| || ||| | | | | |||||| || ||||||| Sbjct 1130 TCTTCGTGAATTCAA-TT-TAA-----AACCTT-CT-A-TCTGTTTTGT-TT-GACATAC 1177 Query 1174 AACACCTCATATTTGATTGGGTGAAACAAAAA 1205 ||||| || |||| ||||| ||||||||||| Sbjct 1178 AACACTTCG-ATTTCATTGGATGAAACAAAAA 1208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46395589989 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5