BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71720.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908768 jgi|Araly1|908768|Al_scaffold_0002_1849 2196 0.0
Ahg899871 jgi|Araly1|899871|Al_scaffold_0004_521 206 6e-52
> Ahg908768 jgi|Araly1|908768|Al_scaffold_0002_1849
Length=1506
Score = 2196 bits (1189), Expect = 0.0
Identities = 1409/1514 (93%), Gaps = 19/1514 (1%)
Strand=Plus/Plus
Query 24 ATGCAAACGCTTCTCTGTCAGCCATGTAAGTCTCTTCCTATACTCACTGCTTCGTC--GT 81
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||| || |
Sbjct 1 ATGCAAACGCTTCTCTATCAGCCATGTAAGTCTCTTCCTATATTCACTTCTTCTTCTTCT 60
Query 82 -CGTCGTCGTTGATTCGTAGCTCCGGTGATGTGCGAGAATGTATCGATTTTAGAGCGTCG 140
||||||||| ||||||||||||||| |||| | ||||||||||| | |||| ||| |||
Sbjct 61 CCGTCGTCGTCGATTCGTAGCTCCGGCGATGCGAGAGAATGTATCTACTTTAAAGCATCG 120
Query 141 GAGAAAGTCTCGAAGTTTCAATTTCATGTAACCCTAAGCCCCTTTGC-CTTTCGTGGTTT 199
|||||||| ||| ||||||||||||||| ||||||||| ||||| | |||||| ||||
Sbjct 121 GAGAAAGTATCGCAGTTTCAATTTCATGAAACCCTAAG-TCCTTTTCGGTTTCGTAGTTT 179
Query 200 CTCAATATGTCGCGAATTTGCTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 259
| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CGCAATTTGTCGCGATTTTGCTACTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 239
Query 260 AGATGTTTCCGGTGTTGGAAATGGAGGAATCGTGGCGGAGGAGGAGATTGAGCTATTGAA 319
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 240 CGATGTTTCCGGTGTTGAAAATGGAGGAATTGTGGCGGAGGAGGAGCTTGAGCTATTGAA 299
Query 320 CAAGCCGAATCCTTTACCAAAATCAGAAAAT--G-AGGAGAGTGGTAAAGCAGACGATGA 376
|||||||| |||| |||| ||||| |||||| | |||||| ||||||||||||||||||
Sbjct 300 CAAGCCGAGTCCTGTACCGAAATCGGAAAATGAGAAGGAGAATGGTAAAGCAGACGATGA 359
Query 377 CGCGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCGGAAGAAGAAGGGGAAGGAATTGA 436
|| ||||||||||||||||||||||||||||||||| |||| |||||| || ||| ||||
Sbjct 360 CGAGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCAGAAGGAGAAGGAGAGGGAGTTGA 419
Query 437 ATCGGAAGTTTCGGATGAGACGGATAGAGTCAGCGTAGAGTATTATGATCCTAAACCAGG 496
||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 420 ATCGGAA------GAGGAGACGGATAGAGTCAGTGTAGAGTATTACGATCCCAAACCAGG 473
Query 497 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAATATTGG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 474 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAGTATCGG 533
Query 557 TGCAGATATGTTGGGAACTATGTTGACGAAAGAGATACTTCCTTTGTATGATAAAGAGTT 616
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 534 TGCGGATATGTTGGGAACTATGTTGACGAAAGAGATTCTTCCTTTGTATGATAAAGAGTT 593
Query 617 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAGTTTTTGGTTAATGGGAAAAT 676
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAATTTTTGGTTAATGGGAAAAT 653
Query 677 GGGGATTGTTAA-G--GATGATGATGAAGGTGTTGAGATTGCGGAGTTTGCTCGGCAAGG 733
|||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 654 GGGGATTGTTAAGGATGATGATGATGAAGGTGTTGAAATTGCGGAATTTGCACGGCAAGG 713
Query 734 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCGGAGGTTTTAGGGAGGACGTTGAG 793
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 714 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCAGAGGTTTTAGGGAGGACGTTAAG 773
Query 794 TGGAAGACCTTTGCTTTCTTCTAGACGGTATTTTCGGAGAATCGCTTGGCACCGAGTGAG 853
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TGGAAGACCTTTGCTTTCTTCTAGACGGTACTTTCGGAGAATCGCTTGGCACCGAGTGAG 833
Query 854 GCAGATCAAACAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACTGGAGG 913
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 GCAGATTAAGCAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACAGGAGG 893
Query 914 GCTTCTCACCAGAATTGAGGGCTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 973
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACTTCTCACCAGAATTGAGGGTTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 953
Query 974 AGTGAACACTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGATTCCTTGTGCAGATAAC 1033
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 954 AGTGATCAGTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGACTCCTTGTGCAGATAAC 1013
Query 1034 GCGATTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1093
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCGACTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1073
Query 1094 GTACCTTCGAGAAGGAACACTCTTAGAAGGAACAGTTGTCAAAATCTTACCATATGGAGC 1153
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1074 GTACCTTCGAGAAGGAACACTATTAGAAGGAACAGTTGCCAAAATCTTACCATATGGAGC 1133
Query 1154 TCAAGTCAAACTTGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1213
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCAAGTCAAACTCGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1193
Query 1214 AAGAAGAATTGGATCGGTGAGCGATGTGCTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1273
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 AAGAAGAATTGGATCGGTGAGCGATGTACTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1253
Query 1274 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1313
Query 1334 AGGATTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAAGCTGAAGAGATGGCGAAGAA 1393
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1314 GGGCTTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAGGCTGAAGAGATGGCAAAGAA 1373
Query 1394 GTACAGAGAAAAAATGCCTTTGGTGGCTACAAGTC-CAATTTCTGATCGTCCTCCGATCA 1452
||| |||||||| ||||||| |||| ||||||| | | || ||||||| |||||| ||||
Sbjct 1374 GTATAGAGAAAAGATGCCTTCGGTGACTACAAG-CGCGATATCTGATCATCCTCCAATCA 1432
Query 1453 CAAGCAGTTTCCCACAGGGCAAGGATGAAGAAATCTATGCTAACTGGGAGTGGTTCAAGT 1512
|| |||||||||| || | |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1433 CAGGCAGTTTCCCTCAAGACAAGGATGAAGAAATCTATGCTAACTGGGACTGGGTCAAGT 1492
Query 1513 TCGAGAGTCAGTGA 1526
||||||||||||||
Sbjct 1493 TCGAGAGTCAGTGA 1506
> Ahg899871 jgi|Araly1|899871|Al_scaffold_0004_521
Length=441
Score = 206 bits (111), Expect = 6e-52
Identities = 179/210 (85%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 220 CTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGAAGATGTTTCCG-GTGTTGGA 278
|||| |||| ||||||||||||||||||| |||||||||| ||||||| || ||||| |
Sbjct 13 CTGTACGTGAAGCTTATGGGATTAGATTTGGCTCACGAGATGATGTTT-CGAGTGTTAAA 71
Query 279 AATGGAGGAATCGTGGCGGAGGAGGA-GA--TTGAGCTATTGAACAAGCCGAATCCTTTA 335
|||||||||||||||||||||||||| || ||||||||||| ||||| |||| | ||
Sbjct 72 AATGGAGGAATCGTGGCGGAGGAGGAGGAGCTTGAGCTATTG--CAAGCTAAATCATGTA 129
Query 336 CCAAAATCAGA-AAAT--G-AGGAGAGTGGTAAAGCAGACGATGACGCGATTCTGGAGCC 391
| |||| | | | || | ||||||||||||| || |||||||||| ||||||||||||
Sbjct 130 ACGAAATTA-ATAGATGAGAAGGAGAGTGGTAACGCCGACGATGACGAGATTCTGGAGCC 188
Query 392 GTTTTTGAAATTCTTTAAACCGGAAGAAGA 421
||||||||||||||||||||| |||| |||
Sbjct 189 GTTTTTGAAATTCTTTAAACCAGAAGGAGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5